Acromyrmex echinatior (Panamanian leafcutter ant): 105154333
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Entry
105154333 CDS
T03917
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03013
Nucleocytoplasmic transport
aec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105154333
03015 mRNA surveillance pathway
105154333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aec03019
]
105154333
Enzymes [BR:
aec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105154333
5.6.2.5 RNA 5'-3' helicase
105154333
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105154333
mRNA cycle factors
Common to processing body (P body) and stress granule
105154333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
105154333
NCBI-ProteinID:
XP_011068096
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDVTQTQSSQ
SIQVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQTSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVTASA
RNKSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSSFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggtcccagcagccagaccctcacgttcctcgacaccgaggag
acggatctgatcggcgcggacactcaaggcagcgagtttgacttcaccgacttcaccctg
ccgtcgccgagtcagacccaggcctcgcagcacgatgtcacccagacgcagtccagtcaa
tccattcaggttaatggaacgaatggtagctcgtcattagatttgaagatttctggagca
gcccagagtcttgctgaattgcaatttgaagaggaggaggaggaagcatactataaccgt
gatttacctgatcatgcatgtaaatactgcggtatccatgaagcatcctgtgtggttatg
tgcaacgtctgccggaaatggttctgcaatggacgcggcaatacgtcagggtctcacatt
atcaatcatcttgtccgtgctaaacacaaggaagtcactttacacagagatggccctctt
ggagagactgttttggaatgttattcttgtgctacaagaaatgttttcgtattgggcttt
attcctgctaaagctgattccgtagttgtattgctatgccgccaaccatgtgcggcccag
acttctttgaaagatatgaattgggatcaagaacaatggaagcctttgattgaagatcgc
agctttttgtcttggttagtgaagttcccatctgaacaagaacagttgagagctagacaa
atctctgcgcaacagattaataaattggaggaattatggcgagacaatgttgatgctact
ttccaagatttagaaaaacctggagtcgacgaggaaccgcaacaggttctattacgctac
gaggatggatatcagtatcaaaatatttttggtccacttgtgaaattggaagccgattac
gataaacgtttgaaagaatctcaaactcaagagaatattgaagtacgatgggacgtagga
ttgaataagaagactatcgcgtactttatgctggccaaaacggatggagatatgaaattg
atgcatggagatgaactgagacttcgttatctgggagaacttcacaagccttggtctggt
attgggcatgtaattaaaattcctgacaattacggggaggaagtcggaattgaactgaaa
aataattctggagcaccaacggaatgtattagtaactttgtcgttgactttatttggaag
agcacgagttttgatcgaatgcaatccgcgttacggaaatttgctgtggatgatacatct
gtatcagcttacatatatcatagattattaggacacgaagtagaagaagtcctgtttcgt
tgtcatctccctaaacattttagtgcaccgaatctacctgacttaaatagatcacaagtg
tatgctgtgaaacatgcgatacaacgacctttatctctgattcaaggaccacctggaaca
ggtaaaaccgtgacaagcgctactattgtatatcaattggtgaaacagaatggcggcccg
gttctcgtatgcgctccttcaaataccgccgttgatcaattgaccgagaaaatacataaa
tcaaatttgaaagttgtacgattgtgtgccaaatcgcgagaggccatcgattctccagtg
agtttccttgcattgcataatcaaataaaaaatatggagacaaacacagagttgcagaaa
ttacaacaactgaaagacgaaacgggcgaattgtcgagcgtcgacgagaagcggtataga
ctcttgaagaaagcggcggagaaagagcttctcgaagcggccgatgtaatttgttgcacc
tgcgtcggcgctggtgacccgagattgcacagattgaaatttcattccatacttatcgat
gagagcatgcaggctactgagccagagtgcatggtaccagttgttctaggagcaaaacaa
ttaatcctcgttggagatcattgccaattaggcccggtagtgatgtgcaagaaagccgct
agagccggtttatctcagtctctgtttgaaagattggtagtgttaggaattaggccattc
cgcttagaagtacaatatcgtatgcatcctgatctttcacgatttccatctaatttcttc
tatgaagggtctctgcagaatggcgtttgtgctgatgaaaggaagttattgaaaattgac
tttccttggcctgcaccagacaaaccgatgtttttctacgtaacacaaggtcaggaagaa
atagctggaagtgggacatcttatttaaatcgtactgaagcatccaacgtggaaaagata
acgacgcgattcttacgttgcggtgtaaaaccggagcagattggagtgataactccttac
gaaggtcaacgagcctatctcgtacaatatatgcagtatcaaggttctctacactcgaaa
ttatatcaagagattgaagtggcgagtgtagacgcttttcaaggacgagaaaaggacatt
ataataatgtcctgtgtacgatccaacgaacatcagggcattggattcttgaacgatccc
agaagattgaacgtggcattgactcgggcaaaatatggcatcattatcgtaggaaatccc
aaagtgctttcgaagcaaccgctctggaatcacttgcttagcttttacaaggagcagaag
gtgttggtcgaaggaccgttgaataatttgaaggagtccatgatacaattcgctaagcca
aagaaactcgtgaacgcagccaatccaggctcgcactttatgtccacgtcgatgtatgat
gcgcgcgaagccctgattcccggatcagtgtacgatcgttctggcactcaagtgaatggc
acgcagaatcacaatccgtactaccaaagaaacgtgccgctcgacattttcagtcgtact
catgatactatcagctacatcagcccggaacgggcacaagcagcgatgaacaacatgccc
gtaccggttggtatgtttatgaatatggcacacgtgccgccgcgtttctacaatcagcat
cagcaagcattacaagcacgccagaatcaaagaaaccgacgtggcgtcactgcttcagcg
aggaataaatcaggtccgcgtatgggtaaattgagtcaaaccgagcaaaacacacaaccg
tacagtcaaccgggtttgccactgacgcaaggcacaactcaaggcatgtcccagcctggt
ttcagtctctcgcaacctggtctcagtcaggcagaactttctcaggactcgttcgcggtc
ggcgaatttcaatcacagatggacggcctgttatcgcaggactcgacttaccaaggcgac
cgaagtagtttttatcagtcgggccagtcgcaagccggaggacagttctcacagccctac
tga
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integrated database retrieval system
