Arsenophonus endosymbiont of Aphis craccivora: E3U36_02025
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Entry
E3U36_02025 CDS
T07584
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aed
Arsenophonus endosymbiont of Aphis craccivora
Pathway
aed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3U36_02025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aed03021
]
E3U36_02025 (rpoC)
03400 DNA repair and recombination proteins [BR:
aed03400
]
E3U36_02025 (rpoC)
Enzymes [BR:
aed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3U36_02025 (rpoC)
Transcription machinery [BR:
aed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3U36_02025 (rpoC)
DNA repair and recombination proteins [BR:
aed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3U36_02025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QLK87246
UniProt:
A0A7D6DMR1
LinkDB
All DBs
Position
399140..403366
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNLDLKQECEVLREELNTTNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLENGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKRMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAEGEGMVLSGPKEAELVYRAG
LASLHARVKVRITEEVRDGEGNVEVATQLVDTTIGRAILWMIVPKGLPYSLVNQPLGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKASIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVVNRDGQDEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDILVPGTADILIPRNALLSEKWCDELEANSVDSVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGNIKL
VNAKFVTNSEGHLVITSRNTELRVVDEFGRTKESYKVPYGAHLNKGDGDGVNGGETVANW
DPHTMPVISEVAGIIRFSDMADGQSIIRQTDELTGLSSIVVLDTAERTAGSKDLRPALRV
ADAKGNDVLIPGTDMPAQYFLPGKAIVQLDDGATINIGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGDDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGAHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIVDAGSSEFLEGEQVEYARVKVANRKLEQDGKVPATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHMVNEPV
ESSQVSADEATANLAELLNAGFGNRDHE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcacagactaaaacagaagagtttgattcgatc
aagattgctctggcctctccagatatgatccgttcatggtcatttggtgaagtgaaaaag
ccagaaactattaactaccgtacgttcaaacctgagcgtgatggtcttttctgtgcacgt
attttcgggccagttaaagattatgaatgtttgtgtggtaaatataaacgattaaaacac
cgaggtgtgatttgtgagaaatgtggtgttgaggttactcagactaaagtgcgtcgtgaa
cgtatgggtcatattgagttggcttcaccgacagcacatatctggtttttaaaatcatta
ccgtcacgtattggtttgttacttgatatgcctttgcgtgatattgagcgggtactctac
ttcgaatcttatgttgtggtcgaagggggtatgacaagcttagagcgtggacaaatcttg
actgaagagcaatatcttgatgctttggaagagtttggtgatgaatttgacgctaaaatg
ggtgcagaagctatccaatctttgctaaaaaatctcgatttgaagcaagagtgtgaagtg
ctacgtgaagagttaaatacaactaactctgaaactaagcggaagaaattgactaagcgt
atcaaactgctagaagcgtttattcagtctggtaataagcctgagtggatgatcctgaat
gtactaccggtattaccgccggatttgcgtcctcttgttccgctagatggtggtcgcttt
gcaacttctgatttaaatgatttatatcgtcgcgttattaaccgtaacaatcgtttaaag
cgtctattggatttggctgcgcctgatatcattgtacgtaatgaaaaacgaatgctacaa
gaagcggttgacgcactgctggagaatggacgtcgtggacgtgcgattactggttcgaat
aaacgtccgctgaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttactgggtaagcgtgttgattactcaggtcgttctgttatcacggttggtccttat
cttcgcctgcaccaatgtggtttgccgaagagaatggcattagaattatttaagccattt
atttatggtaaattggaattacgtggattagcgacaacgatcaaagcagccaagaagatg
gttgagcgtgaagaagctgtcgtctgggatattctcgatgaagtgattcgtgaacatccg
gtgatgttaaaccgtgctccaacgctgcatcgtcttggtattcaggcgtttgagcctatt
ttgattgaaggtaaagcaatccaattacacccacttgtatgtgctgcttataacgctgac
tttgacggtgaccagatggctgttcacgtcccgttaactttagaagcgcagttagaagcg
cgtgccttaatgatgtcgacaaataatattttgtcgccagccagtggtgaacctatcata
gtaccttctcaagacgtggtacttggtttgtattatatgacacgtgattgtgtaaatgct
gaaggtgaaggcatggtattgtctggcccgaaagaagctgagctggtttaccgtgcaggc
ttagcatcattacatgctcgcgttaaagtccgtattacagaagaagtacgtgatggtgaa
ggtaatgttgaggttgcaactcagttagttgataccacaattggtcgcgctatcttatgg
atgattgtacctaaaggcctgccatactcattggttaatcagccgttgggtaaaaaagca
atttctaaaatgcttaatacttgttaccgtgttttaggtttaaaaccaaccgttatcttt
gccgaccagatcatgtacaccggttttgcttatgcagctcgttctggtgcttctgttggt
attgatgatatggtaataccggagaagaaagccagtattattgctgaagctgaagctgag
gttgctgaaattcaagaacagttccaatcaggtctggttactgcgggcgaacgttataac
aaagttattgacatttgggctgcggctaatgagcgtgtcgcaaaagcgatgatggagaat
ttatccacagaaaccgttgttaaccgtgatggccaagacgaacaacaagtttcgtttaac
agcatctttatgatggctgactctggagcacgtggttctgccgcacagatccgtcagtta
gcgggtatgcgtggtttgatggcgaagccagatggttcaattatcgagacaccgatcacc
gctaacttccgtgaaggtttgaacgtattacaatacttcatttcaactcacggtgcacgt
aaaggtctagccgataccgccttgaaaacagcaaactcaggttatttaacccgtcgttta
gttgatgttgcacaagatctggttgtcactgaggatgattgtggtacccacgacggtatt
ttaatgacaccagttattgaaggtggtgacgttaaagaacctttacgcgaacgtgtcttg
ggtcgagtcaccgcggaagatatattagtacctggtacagcggacattttaataccgcgt
aacgccttattaagtgaaaaatggtgtgatgaactggaagctaactctgttgatagcgta
aaagtacgctctgttgtaagttgtgaaactgacttcggtgtttgtgcgaaatgttatgga
cgtgatttagcgcggggtcatatcatcaataaaggtgaagctgttggtgttattgctgct
caatcaatcggtgagcctggcacacagttgaccatgcgtacattccatattggtggtgcg
gcatcacgtgctgctgcggaatcgagtattcaggtacgtaacaaaggtaatatcaaacta
gttaatgctaagtttgtaacaaattctgaaggtcacttggttatcacttctcgtaataca
gaattgcgagtggtagatgaatttggtcgaaccaaagaaagctataaagttccttacggt
gcacacctgaataaaggtgatggtgatggcgttaatggtggtgaaaccgttgctaactgg
gatccacatactatgccggttatcagtgaagttgcgggtattattcgtttctctgatatg
gcagatggacaatctattatacgtcagacagatgaactaacgggtttatcatcaattgtt
gtgctcgatacagctgagcgtactgcgggtagtaaagatttgcgtcctgcattgcgtgtt
gctgatgcgaaaggcaatgatgtattaattccgggtactgatatgccagcgcaatatttc
ttgcctggtaaagcgattgttcaattggatgatggtgcaacaattaatattggtgatacc
ttagctcgtattccacaagaatcgggcggtactaaggatattactggtggtttaccacgg
gttgctgatctattcgaagcacgtcgaccaaaagagccagctattttggctgaaattagc
ggtattatttcttttggtaaggaaactaaaggtaagcgtcgcctagttatcacaccgata
gatggtgatgatgcatacgaagaaatgatccctaaatggcgtcagcttaatgtctttgaa
ggtgagcgagttgagcgtggtgatgtgatttctgatggcccggaatcaccgcatgatatt
ttacgtttgcgtggagcgcatgctgttgctcgttatatcaccaatgaagtccaggaagtt
tatcgtctacaaggcgttaaaattaacgataagcatattgaagttatcgttcgtcagatg
ttacgtaaagtaacaattgttgatgctggtagctctgaattcttggaaggtgaacaagta
gagtatgcacgcgttaaagtagcgaatcgtaaattagagcaagatggaaaagtgcctgct
accttcagtcgtgatctgctaggtattaccaaggcgtctctggcgacagagtcctttatc
tcagcagcgtcattccaggaaacaacacgtgtgcttaccgaagctgcggtggctggaaaa
cgtgatgaacttcgtggtttgaaggagaacgtcattgttggtcgtctaattcctgccggt
acaggctatgcatatcatcaagatcggatgcgtcgtcgtcatatggttaatgaacctgtt
gaatcatcacaagttagcgctgatgaggcaacggctaatttggcagaattgctaaatgcg
ggttttggtaaccgagaccatgagtaa
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integrated database retrieval system
