Arsenophonus endosymbiont of Aphis craccivora: E3U36_03085
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Entry
E3U36_03085 CDS
T07584
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aed
Arsenophonus endosymbiont of Aphis craccivora
Pathway
aed02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aed00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E3U36_03085 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aed03021
]
E3U36_03085 (rpoD)
Transcription machinery [BR:
aed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E3U36_03085 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
HTH_SUN2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QLK87401
LinkDB
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Position
578825..580672
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AA seq
615 aa
AA seq
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MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLILAETATDTDDDAVEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQFSVAEYPEAIAYLLDQYELVEKGEIRLSDIITGFVDPNAEEDLAPTA
THIGSVLPAEALNDDEDEDKDEDDDSDDSDENNVDPELARQKFSEIREQYERTSIEIQKS
GRNHANSVAEIELLSEIFKQFRLVPKQFDYLVNNMRDMMERVRSQERLIMKLCIEQCKMP
KKNFITLFSGNETNGNWLAAAKAMNKPWSEKLVEVEEDIQRSLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRHMLQEMGREP
SPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSE
SLRSATHEVLAGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctactagttaccaaaggtaaagagcaaggc
tacctgacctatgctgaggtcaacgaccatctgccggaagatatcgtcgattcagatcag
atagaagatatcatccaaatgattaatgatatgggcattcaagtgatggaagaagcgcct
gatgccgacgatcttattctggcagaaaccgccactgatactgacgatgatgctgttgag
gctgctgcccaggtattatccagtgttgaaagtgaaataggccgcacaacagatcctgtg
cggatgtatatgcgtgaaatgggcaccgtagaactactgacccgtgaaggtgaaattgat
atcgctaaacgcatcgaagatggcattaatcaggttcagttttctgttgctgaatatcct
gaggctatcgcttatctattagaccaatacgaacttgttgaaaaaggtgaaatccgccta
tctgatattattaccggcttcgttgatccaaacgccgaagaggatttagcaccgacagca
acacatatcggttcagtgttaccggcagaagccttaaatgatgacgaagatgaagataaa
gacgaagacgacgatagtgacgacagtgatgaaaacaatgtcgatccagaactcgctcga
cagaaattttcagaaattcgtgagcaatatgaacgtacttccattgaaatccaaaaaagt
ggccgtaaccatgctaattcagtagcagaaatagagctgttgtctgagattttcaaacag
ttccgtttagtaccaaaacagtttgattatttagtgaacaatatgcgtgatatgatggaa
cgtgttcgttctcaagaacgtctcatcatgaaactctgtattgaacaatgcaagatgccg
aagaaaaacttcattaccctattctcaggtaatgaaaccaatggtaattggttagctgcg
gcaaaagcaatgaataaaccctggtctgaaaaattagttgaagtcgaagaagatatacaa
cgctcgttgcaaaaactacaacaaattgaagaagagactggtttaaccattgaacaggtt
aaagatattaaccgccgaatgtctattggtgaagcaaaagcgcgtcgagcgaaaaaagag
atggttgaagctaacttacggttagttatctctattgctaaaaaatataccaatcgtggc
cttcaattccttgatctgatccaggaaggtaacattggtctaatgaaagcggttgataaa
tttgaataccgtcgtggctataagttttcaacttatgcaacctggtggatccgacaggcg
atcacccgttcaattgctgatcaggcgcgcacaatccgtattccagtgcacatgatcgaa
acgatcaacaaattgaaccgcatttctcgccacatgttacaggaaatgggtcgtgaaccc
tcgcctgaagaattggcagaacgcatgttaatgcctgaggataaaatccgtaaagtacta
aaaattgctaaagaacctatctcgatggaaacacctattggcgatgatgaagattcacat
cttggtgatttcattgaagatactactctagagttaccgttagactctgctacctcggaa
agtctaagatcagctacccacgaagttctagctggcttaacgacccgtgaagcaaaagtt
ctgcgcatgcgctttggtattgatatgaatacggatcacacgctagaggaagtgggtaaa
cagtttgatgttactcgcgagcgaatccgacaaatagaagcaaaagcattacgtaaactg
cgccatccaagtcgttcagaagtgttacgtagtttcctggatgaataa
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