Arsenophonus endosymbiont of Aphis craccivora: E3U36_04660
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Entry
E3U36_04660 CDS
T07584
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aed
Arsenophonus endosymbiont of Aphis craccivora
Pathway
aed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3U36_04660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aed03019
]
E3U36_04660
03009 Ribosome biogenesis [BR:
aed03009
]
E3U36_04660
Enzymes [BR:
aed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E3U36_04660
Messenger RNA biogenesis [BR:
aed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3U36_04660
Ribosome biogenesis [BR:
aed03009
]
Prokaryotic type
rRNA processing factors
E3U36_04660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
StbA_N
Motif
Other DBs
NCBI-ProteinID:
QLK87613
LinkDB
All DBs
Position
complement(883681..886914)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVVLVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDY
GSERHGFLPIKEIAREYFPSHYQPHGRPNIKDVLKEGQEVIIQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPNGMGLIVRTAGVGKSAEAL
QQDLQYRLKHWQAIKKAAENRSAPFLIHQESNVIVRAFRDYLRPDIGEIVIDNAKIVEMA
RHHIEAIGRGDFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHEVHAIVPVPIASYLLNEKRQSVNEIERRQHNIRVIIVPNDQMQ
SPHFNVVRIRKGEEVSALSYYLAQYHEAETNNLIDDAASEKKLPEQPAISTFALQSQADT
KNAGVAKGKSSKQSKLTNKQTSTSLFNRITSFLKKLFTESAQPIEKAEKKSKSGNDKRRN
SERRNNRRPTQRREQNYNIDNRQNRGHTDEQQSRKSRNQKSHFNDTQESAARETQQQRRE
QRAERRRQEEKRQLQLETKTQPLDKKEAETERTVVTSPRRQQRQLAQSIRVANSATEQQK
LSIDKEYQDIKFPIANSTEDKPGLFTAEPILPAEQKTYMPHVTEQVESQEAATNYANERQ
ETIIPRRSRRSPRHLRVSGQRRRRYRDENQSKSLVPLKMAVASPELSSGKVWIQYPIKLN
ELNEVSSNSKNMMTFNEKTASSANPINGNDIIDKVEAEEKTVPISEAAQSTMEKSLLPSA
EVLLIPINTQGTEQNEKACQPLIEAKVMPENNTNVVVETLVDSGATDQLQNGQSVNDELF
IANEIKKDEYSVDEISQEKATDSSDENYSHVQPNISSVTDVIAKKASHRKEETAAIKLVK
KIGYSHAPTTKAPAPEIIESGLEIKAYVRPAIAFHGKNGAGGHVATNIATSNMFKPK
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaacaagaagagttgcgcgttgttcttgttgat
gggcaacgtctttatgacctagatattgaaaatcccggacacgaacaaaaaaaagcaaat
atttacaaaggcaaaattacccgtatagaacctagtctagaagcagcatttgttgactat
ggctcagaaaggcacggctttctcccgattaaagaaattgctcgtgaatacttccctagc
cattatcaaccccacggtcgcccaaacataaaggatgttttaaaagaaggccaggaagtt
attatccaagttgataaagaagagcgaggaaataaaggggccgcgctaacgacttttatt
agtttagctggtagctatcttgttttaatgccaaataaccctcgcgcaggtggaatatca
cgacgtattgagggtgaagatcgcacagaactgaaagaggcattatcctcattagaaata
cccaatggtatgggattaattgtccgtactgctggtgtaggtaaatcagcggaagcgcta
cagcaagatctacaatatcgtcttaaacattggcaagccataaaaaaagctgcagaaaac
cgatcagcgcctttccttattcatcaagaaagtaacgtcattgtgcgggcgtttcgtgat
tacctgcgccctgatattggtgaaatcgtgattgataatgcgaaaattgtcgaaatggct
cgtcatcatattgaagcgattggtcgtggtgattttgcaagtaaaatcaaatattacagt
ggagatgttccactctttagccactatcaaatcgaatcacagatcgagtcggcttttcaa
cgtgaggttcgtttaccgtctggtggtgcactggttatcgataccactgaggcattaacg
gctatcgatatcaattcatcacgttcaacccgtggtggcgatattgaagaaaccgcattc
aacaccaatttagaagctgctgatgaaattgcccgtcaattacggttacgggatttaggt
ggactaattgttatcgattttattgatatgacacccgtccgccatcagcgtgaagttgaa
aatcgtctgcgtgaagccgtacgccaagacagagcacgtatccaaatcgctcggatatca
cgatttggtctacttgaaatgtcacgccaacgtttgagtccgtcacttggtgaatccagt
catcacgtttgccctcgttgtagtggaacaggaacaattcgtgataatgaatcactttca
ctctctattttacgtttgatcgaagaagaagcattaaaagaaaatacccatgaagtacat
gctattgtaccggtaccaattgcttcttatctattgaatgaaaaacgccagtctgtcaat
gaaattgaacgtcggcaacacaatatacgtgtcattattgttcctaacgatcagatgcaa
tcaccgcattttaatgtggtccgcattcgtaagggtgaagaagtttcagcattaagttac
tatctcgctcaatatcacgaagctgaaaccaataatctaatagatgatgccgccagtgag
aaaaagttacctgaacaacccgctatttctacttttgctcttcaatctcaagcagataca
aaaaatgccggggttgctaagggcaaatcaagtaaacagagtaaattaaccaacaagcaa
acttcgacaagtctgtttaatagaattacctcattcttgaaaaaattatttaccgaatca
gcgcaaccaatcgaaaaagcagaaaaaaaatcgaaaagtggtaatgataagcgacgtaat
agtgagcggcgtaataatcgtcggccaactcaacgccgtgaacagaattacaatatcgat
aaccgtcaaaatcgtggacataccgatgagcaacaatcacgtaaaagccgtaatcagaaa
agtcattttaatgatactcaagagagcgcagcacgtgaaactcaacaacagcgtcgcgag
cagcgagctgaacgtcgtcgtcaggaagaaaaacgccagctgcaacttgaaactaaaaca
caaccacttgacaagaaagaggctgaaacggaaagaacggtcgttacctctcctcgccgt
caacagcgtcaactagctcaatcaatacgggttgcaaatagtgcgactgagcagcaaaaa
ttatctattgataaagaatatcaagatattaagtttcctattgccaatagcacagaggat
aagcctggtttgttcactgccgaaccgattctgcctgcggagcaaaaaacctatatgccg
catgtcaccgaacaggttgaatctcaagaagcagctaccaattatgctaatgaacgacaa
gaaacgatcattccgcggcgatcaagacgatctcctcgccacctacgcgttagcgggcaa
cgccgtcgtcgttatcgtgatgaaaatcaaagcaaatcattagtaccattaaaaatggcg
gttgcttcgcctgaattatcttcgggtaaagtctggatccaatacccgattaagttaaat
gaattgaacgaagtgtcatcaaatagtaaaaatatgatgacatttaatgaaaaaacagca
tcttctgccaatccaattaacggtaatgacatcatcgataaagttgaagcagaagaaaaa
acagtgccaattagtgaagcggctcaatcaacgatggaaaaaagcttactaccctcagcc
gaagtattgcttattcccataaatactcaaggtactgaacaaaacgaaaaagcctgtcaa
ccacttattgaagcgaaagtaatgcctgaaaacaacactaatgtggttgtagaaacgcta
gtagatagtggagcaaccgatcagctacaaaatgggcaatcggttaatgatgaacttttc
atagccaatgagattaaaaaggatgaatattcagtcgatgaaatcagtcaggaaaaagca
accgactcatcggatgaaaattatagccatgttcagccaaatatatcttctgtgaccgat
gtcattgcaaaaaaggcaagtcatcgaaaagaagaaacggctgcgataaaattagtaaaa
aaaataggctattcccatgcgccgaccacaaaagcaccggcgccggaaattattgaaagc
ggtttggaaattaaagcttacgtacgacctgcgatagctttccatggtaaaaatggtgcc
ggtggtcatgttgccacaaatatagccacatccaatatgtttaaacccaaataa
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