Aeromicrobium yanjiei: GEV26_11345
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Entry
GEV26_11345 CDS
T06272
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aef
Aeromicrobium yanjiei
Pathway
aef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEV26_11345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aef03019
]
GEV26_11345
Messenger RNA biogenesis [BR:
aef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEV26_11345
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QGG41914
UniProt:
A0A5Q2MFJ7
LinkDB
All DBs
Position
complement(2311995..2313674)
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AA seq
559 aa
AA seq
DB search
MSHMHTELGAPPTLPEGALRVIPLGGLGEIGRNMTVFEYGGKLLIVDCGVLFPEENQPGV
DLILPDFGPIRDRLKDVVGIVLTHGHEDHIGGVPYLLRERGNIPVIGSQLTLAFLDPKLK
EHRLKDAPKYVVSEGDVETFGPFELEFVAVNHSIPDALAVAIKTPAGVALHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERNITPAIDAVFASSKKRIIVA
SFASHIHRVQQVIDAAAKHDRKVAYVGRSMVRNMQIARELGYLHVPDGVVVDKIDAAPPH
KMVLMSTGSQGEPMAALSRMANNSHQQVSLEPGDTVLMASSLIPGNENAIYRVIDGLTKL
GANVVHKGNALVHVSGHASAGELLYCYNIVQPSNVLPVHGEIRHLHANAKLATATGVPNV
LLAEDGYVIDLVDGHASITGAVDCGYVYVDGSSVGDLTDSELKDRRVLGEEGFISVVVVV
DSATGKILSGPEIHARGIAEEDSAFDEIMPKIISALEEAISDGTRDSGQLQQVIRRVLGS
FVGRRLRRRPMILPVVIQA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagccacatgcacacggagctcggcgctccgcccaccctgcccgaaggcgccctgcgc
gtcatccccctcgggggactcggagagatcggtcgcaacatgaccgtcttcgagtacggc
ggcaagctgctgatcgtcgactgcggcgtcctcttccccgaggagaaccagcccggtgtc
gacctgatcctgcccgacttcggtccgatccgtgaccggttgaaggacgtcgtcggcatc
gtgctgacccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgtgagcgc
ggcaacatcccggtcatcggctcgcagctgacgttggcgttcctggaccccaagctcaag
gagcaccggctcaaggacgcccccaagtacgtcgtgtccgagggcgacgtcgagacgttc
ggcccgttcgagctggagttcgtcgctgtcaaccactcgatcccggacgccctcgcggtc
gcgatcaagacgccggccggcgtcgcgctgcacaccggcgacttcaagatggaccagctg
ccgctcgacggccgcatcacagacctgcgcgcattcgcccggctcggcgaggagggggtc
gacctcttcctgaccgactcgaccaacgccgaggtccccggcttcacgacgtccgagcgc
aacatcacgccggcgatcgacgcggtcttcgcgtcgagcaagaagcgcatcatcgtcgcg
tcgttcgcctcgcacatccaccgcgtccagcaggtcatcgacgccgcggccaagcacgac
cgcaaggtcgcttacgtgggccgctcgatggtccgcaacatgcagatcgcccgcgagctg
ggctacctccacgtgccggacggcgtcgtcgtggacaagatcgacgccgcgccgccgcac
aagatggtgctgatgtcgacgggctcgcagggcgagccgatggccgcgctgtcgcgcatg
gccaacaacagccaccagcaggtcagcctcgagcccggcgacacggtcctcatggcctcc
tcgctcatccccggcaacgagaacgcgatctaccgcgtgatcgacggcctgaccaagctg
ggtgccaacgtcgtgcacaagggcaatgcgctcgtgcacgtctcgggccacgcctcggcc
ggcgagctgctctactgctacaacatcgtccagcccagcaacgtgctgccggtgcacggc
gagatccggcacctgcacgccaatgccaagctcgcgaccgcgacgggcgtgcccaacgtg
ctgctggccgaggacggctacgtcatcgacctggtcgacgggcacgcgtccatcacgggt
gctgtcgactgcggctacgtgtacgtcgacggctcgtccgtgggcgacctgacggactcc
gagctcaaggaccgtcgcgtcctcggcgaggagggcttcatctcggtcgtcgtcgtggtc
gactcggccaccggcaagatcctgtccgggcccgagatccacgcccgcggcatcgccgag
gaggactcggcgttcgacgagatcatgcccaagatcatctcggcgctcgaggaggccatc
tccgacggcacccgcgactccggccagctccagcaggtcatccgtcgcgtgctcggctcg
ttcgtgggacgccgcctgcgtcgccgtccgatgatcctcccggtcgtcatccaggcctga
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