Entry |
|
Symbol |
csrD
|
Name |
(GenBank) RNase E specificity factor CsrD
|
KO |
K18765 | RNase E specificity factor CsrD |
|
Organism |
|
Brite |
KEGG Orthology (KO) [BR:aej00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:aej03019]
E5E97_06160 (csrD)
Messenger RNA biogenesis [BR:aej03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E5E97_06160 (csrD)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
1235860..1237818
|
AA seq |
652 aa
MDVVGHTERHMKLTTQLVSFITLCVIAAMAMVLLGGVFSFRELGMEMQQKKVNSLVEIID
KQLEVADDHQDLTRWLPTLLRSAHVVELEIRQDKQRIYWFRDVQQPTDESLLIPYHQPMP
HQPGMQADFKLERPFKEFEYSIKAMSGISLGVFIVVFGLWYSIRWLRLQLRGAELLAERA
QLILDNKLTKLAHDPADEWPQPASQALDYLLAELADARKERSRFDNFIRSNAFVDKMTGI
GNRLFFDNRLESAIMEASVMSGGVLLIELAGLEELDPELNGRQSQDLLMEASASIAAFVR
KHNGALQARYAGQVFAVLLPNMSESEMVDGAGQLHKSLQRLHWPEAVNPDTAVYLGAVCY
QAEDSLLKVQEEAELALKSARLQGHTGWFLYEKQLDEEQSSKGTVRWRTLIGRRIEEHGI
DFYVQPVQQERDQVVLQQDLLIRIHDEQGRELQAGVFMPMAEKAGLLLPLDRLVAEQTLG
LLRQRSEQSYPISLTLCAQSLLHREFQRWLFFDLFQLPRSTNERLILQLSEAQVTRHYEA
LKRPLRALRMLGCQLAIDHAGQDVVSTQYIKEFEINFLKLHPSLVREIHTRQVNQMAVRS
LVGGCANTRTRVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPERLVLEPAGA |
NT seq |
1959 nt +upstreamnt +downstreamnt
atggatgttgtcgggcatacggaaaggcacatgaaactgaccactcagcttgtctcgttt
attaccctgtgtgtcattgcggccatggccatggtgctgcttggcggggtgttcagcttt
cgtgagctgggcatggagatgcaacagaagaaggtcaactcgctggtcgagatcatcgac
aagcaactggaggtggccgacgatcatcaggatctcacccgctggctgccgaccctgctg
cgctcggcccacgtggtggagctggagatccgccaggacaagcagcggatctactggttt
cgcgacgtacagcagccgaccgacgagagcctgctgatcccctatcaccagcccatgccc
catcagccgggcatgcaggccgacttcaagctggagcggccgttcaaggagttcgagtac
tccatcaaggcgatgtccggcatctccctcggcgtcttcatcgtggtattcggcctctgg
tactccatccgctggctgcgattgcagttgcggggtgccgagctgctggccgagcgcgcc
cagctgatcctcgacaacaaactcaccaagctggcccatgatccggccgacgagtggccg
cagccggccagccaggccctcgactatctgctggccgagctggcggatgcccgcaaggag
cgcagccgcttcgacaacttcatccgcagcaacgccttcgtcgacaagatgaccggcatc
ggcaaccggctgtttttcgacaaccggctggagagcgccatcatggaggcgagcgtgatg
agcggcggcgtgctgctgatcgagctggccggcctggaggagctggatcccgagctgaac
ggccgtcagagccaggatctactgatggaggcgagtgcctccatcgccgccttcgtgcgc
aagcacaacggtgccctgcaggcccgctatgccggccaggtttttgccgtgctgctgccc
aacatgtcggaaagcgagatggtggatggcgccggccagctgcacaagagcctgcagcgg
ctgcactggcccgaggcggtcaatccagacaccgccgtctatctcggcgcggtttgctat
caggccgaggactccttgctcaaggtgcaggaggaggcggagctggcgctcaagagcgcg
cggctgcagggccacaccggctggttcctctacgagaaacagctggacgaggagcagagc
agcaagggcacggtgcgctggcgtaccctgatcggccggcgcatcgaagagcacggcatc
gatttttatgtgcaaccggtgcagcaggagcgggatcaggtggtgttgcagcaggatctg
ctgatccggatccacgacgagcaggggcgggagctgcaggccggcgtcttcatgccgatg
gcggagaaggcggggctgttgctgccgctggatcggctggtggcggagcagaccctcggc
ctgctgcgccagcgctccgaacagagctaccccatcagcctgaccctctgcgcccagagc
ctgctgcaccgggagtttcagcgctggctgttcttcgatctgttccagctgccgcgcagc
accaacgagcgcttgatcctgcaactctccgaggctcaggtcacccgccactacgaggcg
ctcaagcggccgctgcgggcgctgcgcatgctgggctgccagctggccatcgatcatgcc
ggccaggatgtggtgagcacccagtacatcaaggagttcgagatcaacttcctcaagctg
caccccagcctggtgcgcgagatccatacccgccaggtcaaccagatggcggtgcgcagc
ctggtggggggctgtgccaacacccgcacccgggtcatcgccgtgggggtggagagcggc
gacgagtggaagatgctgcgccacctcggggtgcacgccgggcagggcccctggtttgcc
gagccggaacggctggtgttggagccggccggcgcctga |