Aeromonas sp. 2692-1: E5E97_16550
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Entry
E5E97_16550 CDS
T08798
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aej
Aeromonas sp. 2692-1
Brite
KEGG Orthology (KO) [BR:
aej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aej03019
]
E5E97_16550 (hrpA)
Enzymes [BR:
aej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E5E97_16550 (hrpA)
Messenger RNA biogenesis [BR:
aej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E5E97_16550 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
ResIII
AAA_23
PhoH
AAA_30
NTPase_1
HA2_N
NACHT
TsaE
T2SSE
AAA_25
SLFN-g3_helicase
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
QJT14381
LinkDB
All DBs
Position
complement(3465018..3468917)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSLSIEALRRRLPACMNLDARRLSSRLHGAKKLPEGKQAAVLETIAADLDAALARYQSRL
AGVPKVTYPDNLPVSQKQSEIAKAIEEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLTSDKSEGLEERDELQGIFDAVEELAREGLGDILIFMNGEREI
RDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQQHAGRRIVLATNVAETSLTVPGIRYV
IDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFNGRPAF
TDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVRELPATGD
REAKLQLTETGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERPMEKKQ
AADEQHRRFEDKDSDFLAFVNLWNYLKEQQDSLGSNPFRRMCQKEFLSYLRVREWQDIHF
QLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHLFPASG
LFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAGHFIKLHHSDPHWSKKNGAVMAK
EKVTLYGLTLVNERTINFSRIDPALCRELFIRRALVEGDFETRHRFFGDNRKLLAEVEAL
EHKSRRRDILVDDEDLFRFYDARLPEEVISARHFDKWWKEAQKQDAELLNFEKEMLMKGD
AAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWLIPGLR
HELLVALIKSMPKPMRKNFVPAPNYADALLASINPEQGPLLDEMERQLRRMTGVTVPRES
WDWNAVPDHLKLTFRVVDDKHKKVAEGKNLEALKESLRGKVQETLSQVADDDIEQSGLTL
WSFGELPQEYSQKRGGFEVKAYPALVDQKDSVAIQLVESPVVQQQLMWAGQRRLVLLNVP
SPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGMAWDEAGFEALKE
YVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQQQLGNLIHKGFVT
ETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVHSVESEYKALLAKIPKSQLIPI
EVANIRWMIEELRVSFFAQNLGTPYPVSDKRVLNAIAQC
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctccctgcctgcatgaatctcgacgcc
cgccgtctctccagccgtctgcacggggccaagaagctgcccgagggcaaacaggcggcc
gtgcttgagaccatcgccgccgatctggatgcggcactggcgcgttatcagtcccgtctg
gcaggcgtacccaaggtcacctatccggacaacctgccggtcagccagaagcagtcggag
atcgccaaagccattgaagagcaccaagtggtgatcatcgccggtgaaaccggctcgggc
aaaaccacccagatccccaagatctgtctggcgctcgggcgtggagtgaagggtttcatc
ggccacacccagccgcgtcgtctggcggcccgcaccgtggcggcccgcattgccgaagag
atggagtccgagctcggtcactacgtgggctacaaggtgcgctttaccgatcaggtgagc
gaacagacccacatcaagctgatgaccgacggtattctgctggcggagatccagaacgac
cggatgctcacccagtacgacaccatcatcatcgatgaggcccacgagcgcagcctcaac
atcgatttcatcctaggttacttgaagcagctgctgccaaggcgccccgacctcaaggtg
atcattacctcggccaccatagacccgcaacgcttctcccgccatttcaacaaggcaccg
gtgatcgaggtctccggtcgcacctatccggtggaggtgcgctaccgtccgctcaccagt
gataaaagtgaagggctggaggagcgcgacgagctgcaggggatcttcgatgcagtggaa
gagctggcccgcgaggggctgggggacatcctcatcttcatgaacggcgagcgggagatc
cgcgataccgccgatgccctgcgcaagctcaacctgcgcgacaccgaggtgctgccgctc
tacgcccgcctctccaacgcagagcagaacaaggtgttccagcaacacgccgggcggcgc
atcgtgctcgccaccaacgtggcggaaacctcgttgacggtgccgggcattcgctacgtc
atcgatccgggcaccgcccgcatcagccgctactcctggcgtaccaaggtgcagcgcctg
cctatcgagccggtctcccaagccagcgccaaccagcgtaagggtcgctgcggccgggtg
gcggacggtatctgtatccgcctctactccgaggaggatttcaacggccgcccggccttc
accgaccccgagatcctgcgcaccaacctggcctccgtcatcctgcagatgctggcgctc
ggccttggcaacatggaggccttccccttcgtcgagccacccgagtcgcgccatatcaag
gatggcctgaccctcttgaaagagctggaggcggtgcgcgagctgcccgccacgggcgat
cgcgaagcgaaactgcagctgaccgagaccggtcgccagctctcgcgcatcccccttgat
ccgcgtctggcgaagatggtgatcagtgcggcgcagaccggctgtctgagcgaagtgatg
gtgatcaccgcggctctcagcattcaggatcctcgcgagcggcccatggagaagaagcag
gccgccgatgagcagcacagacgctttgaggacaaggattccgacttcctcgccttcgtt
aacctctggaactatctgaaagagcagcaggattcccttggcagcaacccgttccgccgc
atgtgccagaaggagtttctctcctacctgcgggtgcgcgagtggcaggacatccatttc
cagctgcgtcagacggtgaaagagctgggttttaaagccaaccatgaaccggcggatttc
aagacggtgcactgcgcgctgctgaccggccttttgagccacatcggcaacaaggatctg
gaaaagcccgagttcctcggggcccgcaatggccgtttccacctgttcccggcctcgggt
ctgttcaagaagccgcccaagtgggtgatggccgccgagctggtggagacctcgcgcctc
tacgcccgtatcaacgccaagattgaacccgagtgggtggagccactggcgggccacttc
atcaagctgcaccacagcgatccccactggtcgaagaaaaatggtgccgtgatggccaag
gagaaggtgacgctttatggcctgaccctggtcaatgagcgcaccatcaacttcagccgt
atcgacccggcgctgtgccgcgagctgtttatccgccgcgccctggtggaaggggatttc
gagacccgtcaccgtttctttggcgataaccgcaagctgctggccgaggtggaggcgctg
gagcacaagtcccgtcggcgcgacatcctggtggatgacgaggatctgttccgcttctac
gatgcccgcttgccagaggaggtgatctccgctcgccatttcgacaagtggtggaaagag
gcgcaaaagcaggacgccgagctgctcaacttcgagaaagagatgttgatgaagggggat
gcggcccacatcagcgatctcgactaccccaacttctggcagcaggggcgcctcaagctc
aagctgacctatcagttcgagccgggggaggcggcggatggcgtgaccctgcatattccg
ctgccgctcctgaatcaggtggaggtgaaggggttcgagtggctgatcccggggcttcgt
cacgagctgttggtggccctcatcaagtcgatgccaaagccgatgcgcaagaacttcgtg
ccggcgcccaactatgccgatgcactgctcgccagcatcaatcccgagcaggggccgctc
ttggacgagatggagcgccagctgcgccgcatgaccggcgtgaccgtgccccgtgaatcc
tgggactggaatgcggtgcccgatcacctgaaactcaccttccgggtggtggacgacaag
cacaagaaggtagcggaaggcaaaaatctggaggccttgaaagagtcgctgcgcggcaag
gtgcaggagaccctctcccaggtggcggacgatgacatcgagcagtccggcctcaccctg
tggagctttggcgagctgccccaggagtacagccagaagcggggcgggtttgaggtgaaa
gcctatccggccctggtggatcagaaggattcggtcgccatccagctggtggagagcccg
gtggtgcagcagcagctgatgtgggcgggccagcgccggctggtgctgctcaacgtgcca
tcgcccatcaagtatctgcaggagaagctgcccaacaaggccaagctggggctctatttc
aacccgtttggcaaggtggccgagcttatcgacgactgtatcgcctgtggttgcgacaag
ctgattgagcagcacggcggcatggcgtgggacgaggccggtttcgaggcactcaaggag
tatgttcgcgccgagctcaacgatgcggtggtggaggtggccaagcaggtggaagccgtg
ctgaccctgtcccacgagatcaagaaacggctcaagggcaagatgcagctcgacaccgcc
tttgccatgtcggacatccagcagcagctcggcaaccttatccataagggctttgtcacc
gagaccggctggcagcggctgcctgacttgttgcgctacctgcgggccatcgagcggcgc
ctggagaagctcgccatcgatcccaaccgggatcgggtctatatgctcaaggtgcacagc
gtggagtcggagtacaaggcgctgctggccaagatccccaaatcccagcttattcccatc
gaggtggccaatatccgctggatgatcgaggagctgcgggtatcgttttttgcccagaat
ctggggaccccctatccggtctccgataaacgggtgctgaatgctatcgctcagtgctaa
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