Entry |
|
Name |
(GenBank) GGDEF domain-containing protein
|
KO |
K18765 | RNase E specificity factor CsrD |
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Organism |
|
Brite |
KEGG Orthology (KO) [BR:aej00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:aej03019]
E5E97_17685
Messenger RNA biogenesis [BR:aej03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E5E97_17685
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
3735164..3736804
|
AA seq |
546 aa
MLNKLGSNQLLVIALLCAPLLLLQGLWLAFTSTLLTLLIILATSLLGFGLLSMLTLRLQQ
VDRSHQEQVWCRALQLRDPTCLTTPEAQAALQQLLAHFNEAERDAHRQISELHNQATQDE
LTQLQNRHAFRRDMTELLQRDQDTQTATLVLIRATELGKLNAQRGFQSGDAYIKDIANII
TRVVSRFPGHQVYRISGADFAVLVQPVANIPPPLLGRDLKIAFDHYQQQHELESAAYSGL
TRLSSGQKIEAILARADLALARAQTETVNGWAIQQDDSVVELQGQHHWKLVLTELLEQER
ISFTYQPIQPMHRSMLAYNEIYTRFSSADGTVLPTDTLFAMAQRLDMVMRLEQMLVTHVM
RQYRAFGSNQSRWGINLSSNLLQNSAFLIWLDRQLLNDPNTSANLVFELDEEHLERNLTG
AKRVFELLRRNGNRSAICNFGKGIGSFNLFRELKPDYIKLDPALITGLEQDLTNQQFVRM
IVDVSHRMGCQVIAEGVEQLGQKQLLQGMYVDGLQGYLIAKPQQLRPDISQLGLFTEDAS
TSTESE |
NT seq |
1641 nt +upstreamnt +downstreamnt
atgttgaacaagctcgggagcaaccagctgctggtgatcgctctcctctgcgctcccctg
ctgctgttgcaggggctctggctcgccttcaccagcacgctgctgaccctgcttatcatc
ctcgccaccagcctgctcggctttggcttgctgagcatgctgaccctgcgccttcagcag
gtggatcgcagtcaccaggagcaagtgtggtgccgggcgctgcagctgcgcgaccccacc
tgtctgaccacgcccgaggcccaggccgccctgcagcaactgctcgcccacttcaacgaa
gccgagcgcgacgctcaccgccagatcagcgagctgcacaaccaggcaacccaggacgag
ctgacccagctgcaaaaccgccacgcctttcggcgcgacatgaccgagctgctgcagcgg
gatcaggatacccagaccgccactctggtgctgatccgcgccaccgagcttggcaagctc
aacgcccagcgcggctttcagtcgggggatgcctacatcaaggatatcgccaatatcatc
accagggtggtgagccgcttccccggccatcaggtctatcgcatctcgggggccgacttc
gcggtgctggtgcagccggtcgccaatatcccgccccccctgctcgggcgggatctgaag
atcgccttcgatcactatcagcagcagcatgaactggagagcgccgcctactccgggctg
acccggctcagcagcggccagaagatagaggcaattctggccagggcggatctggcgctg
gcccgcgcccagaccgagacggtcaacggctgggccatccagcaggatgacagcgtggta
gagctgcaggggcagcatcactggaagctggtactgaccgagctgctggagcaggagcgg
atcagcttcacctaccagccgatccagccgatgcaccgcagcatgctggcctacaacgag
atctacacccgtttcagcagtgccgacggcactgtgctgcccaccgacaccctgttcgcc
atggcccagcggctggatatggtgatgcggctggaacagatgctggtgacccacgtgatg
cgccagtaccgggcctttggctcgaatcagagtcgctggggcatcaacctctccagcaac
ctgctgcaaaacagcgcctttctgatctggcttgaccggcagctgctcaacgaccccaac
accagcgccaacctggtgttcgaactggatgaagagcatctggagcgcaacctgaccgga
gccaagcgggtgttcgaactgctcaggcgcaacggcaaccgctctgccatctgcaacttc
ggcaaggggatagggtcattcaacctgtttcgcgagctcaagcccgactacatcaagctg
gatcccgctctcatcaccgggctggagcaggatctgaccaaccagcagttcgtgcggatg
atcgtcgacgtgtcacaccggatgggttgtcaggtgattgcggaaggggtggagcagctg
ggtcagaagcagctgctgcagggtatgtatgtggacgggctgcagggctatctcatcgcc
aagccccagcagttgcggccggatatcagccagctcgggctgtttactgaggatgcttca
acttcaacagagtcagaatga |