Aeromonas encheleia: NCTC12917_00566
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Entry
NCTC12917_00566 CDS
T06531
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ael
Aeromonas encheleia
Brite
KEGG Orthology (KO) [BR:
ael00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ael03009
]
NCTC12917_00566 (srmB)
Enzymes [BR:
ael01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12917_00566 (srmB)
Ribosome biogenesis [BR:
ael03009
]
Prokaryotic type
rRNA helicases
NCTC12917_00566 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEG95075
LinkDB
All DBs
Position
1:589269..590489
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AA seq
406 aa
AA seq
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MSQSFDDFDLNPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLP
AMQHLLDFPRRKPGPCRMLILTPTRELALQVSAHAKALAVHTHLSIETIIGGVSHEEQLP
ALTKTTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYR
KHTMLFSATLEGAGLEKFANEILKEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIH
ILKDPETQKAIVFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHAGEVPF
LIATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMAMVS
KIERYTEERLKRRVIDVLRPKHKEARVPVKKKKPKDGKKKSAKKKK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtcctttgatgatttcgacctgaatccagccctcaaccgggccctggccgag
atgggattcacccgccccactaccattcagcagatggtgctggagccagccctggacggc
cgcgatattctggcatccgctccgaccggtaccggcaagacggccgccttcctgctgccc
gccatgcaacacctgctggatttcccgcgccgcaagccgggcccgtgccgcatgctgatc
ctgaccccgacccgcgagctggcgctgcaggtcagtgcccacgccaaggcgctggcggtg
cacacccacctcagcatcgagaccatcatcggcggtgtcagccacgaagagcagctgccg
gccttgaccaagaccaccgacatcgtagtggcgaccccgggccgtttgctggaatacatc
gacaaagaagagttcgagagccacgacatcgaagtactggtgttggatgaagccgatcgc
atgctggacatgggcttcgtcaaggacgtgaaccgcatcgtggccgaggcgcgttaccgc
aagcacaccatgctgttctccgcgaccctggaaggggccgggctggagaagttcgccaac
gagatcctcaaggagccggtcgagctgcacgccgagcccccccgcagcgagcgtcgccct
atcacccagtgggtgcacctggccgacgatgccgcccacaagctggcgctgctgatccac
atcctgaaggatccggaaacccagaaggccatcgtcttcgtcaagacccgtgagcggctg
gctgagctctccggccagttgcaggcggccggtgtctcctgcgcctggatccgtggcgag
atggagcagagcaagcgcatcgagtcgatccgcaagttccacgccggtgaagtgcccttc
ctcatcgccaccgacgtggccgcccgtggtatcgacttgcccaacgtcagccatgtcatc
aactacgacatgccctacggcaccgacgtctatgtgcaccgcatcggccgcaccggtcga
gccggcaaccgtggctgcgccatcagcctggtggaggcccacgatatggccatggtctcc
aagatcgagcgttacaccgaagagcgcctcaagcgccgggtgatcgacgtgctgcgtccc
aagcataaggaagcgcgggtgccggtgaagaagaagaaacctaaggatggcaagaagaag
tcggccaagaaaaagaagtaa
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