Aeromonas encheleia: NCTC12917_00642
Help
Entry
NCTC12917_00642 CDS
T06531
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ael
Aeromonas encheleia
Pathway
ael03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ael00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12917_00642 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ael03019
]
NCTC12917_00642 (rnr)
03016 Transfer RNA biogenesis [BR:
ael03016
]
NCTC12917_00642 (rnr)
Enzymes [BR:
ael01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12917_00642 (rnr)
Messenger RNA biogenesis [BR:
ael03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12917_00642 (rnr)
Transfer RNA biogenesis [BR:
ael03016
]
Prokaryotic type
tRNA degradation factors
NCTC12917_00642 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
HTH_20
CSD
Motif
Other DBs
NCBI-ProteinID:
VEG95151
LinkDB
All DBs
Position
1:659789..662155
Genome browser
AA seq
788 aa
AA seq
DB search
MSQKDPFLQREAEKYENPIASREMLLELIKGHEKPMSREELAKALKLTEEEPLEALRRRL
RAMERDGQLVFTRNQCYALPDRLNLVKGYVLGHKDGFGFLRPEGGGSDLFLNNREMQRLM
HGDYVLVQPTEIDRKGRQEARLVRLLKPREADIVGRYFVENGVGFVVPDDSRIGQDILIP
EGENKGARQSQVVVVRITQRATSRINSVGTVLDVLGENMAPGMEIEIALRTHGIPHTWPE
EVTKEVAGLGEQVPEKAKEGRIDLRALPLVTIDGEDARDFDDAVFCEAKRGGGWRLWVAI
ADVSSYVKPGTALDAEAYQRGNSVYFPEFVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAAGRMSGYKFYEAVMNSHARMTYSKVAAILDGEPKLRQQYEPLVGHIEELNNLYKALKH
ARHQRGAVEFESEETRFIFNAQRKIDQIVPLVRNDAHKIIEECMIQANVAAARYIEKNEA
FALFRVHDRPGEERLTGFRDFLAELGLELKGGLEPEPKDFAELAAKFEGRPDAELLSTML
LRSMRQAVYQADNIGHFGLALKSYAHFTSPIRRYPDLILHRAIKYQTAKEQQGNLRHKWT
PSGGYHYQLEEVDPMGEHCSMTERRADDATRDVADWLKCEYMLDHVGDEFDGVIASVTGF
GFFVRLAEIHIDGLVHVSTLTNDYYQFDPLHMQLIGENFRRRYRLGDKVRVKVMGVNLDD
RKIDFVMVEAPLTGKDGKEVVRKPAKGGLRHDKRKESKDSGKSDKGGRAKPSNRRPSKKA
REKTKSTK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaaagatcctttcctccaacgcgaggccgaaaaatacgaaaaccccatcgcc
agccgcgagatgctgctggagctcatcaagggccatgagaaacccatgtcccgggaagag
ttggccaaggccctcaagctgaccgaagaagagccgctggaggccttgcgccgtcgtctg
cgcgccatggagcgcgatgggcagctcgtgttcaccaggaaccaatgttacgccctgccg
gatcgtctgaatctggtgaaaggctatgtgctcggccataaagatggattcggttttctg
cgccccgagggtggtggatcggatctcttcctgaacaaccgtgagatgcagcgcctgatg
cacggcgactacgtgctggtacagccgaccgagatcgatcgcaagggccggcaggaggcc
agactggtgcgcctgctcaagccccgcgaggcggacatcgtcggccgctacttcgtcgag
aacggggtcggcttcgtggtgccggatgacagccgcatcggccaggacatcctcatcccc
gaaggggagaacaagggtgcccgccagagccaggtcgtggtcgttcgcatcacccagcgc
gccacctcccgcatcaattcggtcggtaccgtgctggacgtgctgggcgagaacatggcg
ccgggcatggagatcgagatcgccctgcgtacccacggcatcccgcacacctggccggaa
gaggtgaccaaagaggtcgcaggtctgggcgaacaggtgccggagaaggccaaagagggt
cgtatcgacctgcgtgccctgccgctggtcaccatagacggggaagatgcgcgtgacttc
gatgacgccgtcttctgtgaagccaagcgcggtggcggctggcgcctgtgggtcgccatc
gcggatgtctcctcctacgtgaagcccggcacggcgctggatgccgaagcctatcagcgc
ggcaactccgtctatttccccgagttcgtggtgcccatgctgccggaggtgctctccaac
ggcctctgctccctgaacccgcaggtcgaccggctgtgcatggtgtgcgagatgaccatc
tccgccgccggccgcatgtccggttacaagttctacgaagcggtgatgaattcccacgcg
cgcatgacctacagcaaggtggcggcgatcctggatggcgagcccaagctgcgtcagcag
tacgagccgctggtgggccacatcgaggagctcaacaacctctacaaggcgctcaagcac
gcccgtcaccagcgtggcgccgtggaattcgagagcgaagagacccgcttcatcttcaac
gcccagcgcaagatcgaccagatagtgccgctggtgcgcaacgatgcccacaagatcatc
gaagagtgcatgatccaggcgaacgtggccgcggcccgttacatcgagaagaacgaagcc
tttgccctgttccgggtgcacgatcgtccgggcgaagagcgcctgaccggtttccgtgac
ttcctggccgaactgggtctggagctcaaggggggtctcgagcccgagccgaaggacttc
gccgagctggccgccaagtttgaggggcgtccggatgccgagctgctctccaccatgttg
ctgcgctccatgcgccaggcggtctatcaggccgacaacataggtcacttcggtctggcc
ctgaagtcctacgcccacttcacctcgccgatccgccgctatccggatctcatcctgcac
cgcgccatcaagtaccagacggccaaggagcagcagggcaacctgcgccataagtggacc
ccgagcgggggttatcactaccagctggaagaagtggatcccatgggcgagcattgctcc
atgaccgagcgccgtgccgacgatgcgacccgcgacgtggccgactggctcaagtgtgag
tacatgctggatcacgtgggtgacgagtttgatggcgtcatcgccagcgtcaccggcttc
ggtttcttcgtccgtctggcggagatccacatcgacggtctggtgcacgtcagcaccctc
accaacgactactaccagtttgatcccctgcacatgcagctgatcggcgagaacttccgc
cgtcgctaccgcctgggtgacaaggtacgcgtcaaggtgatgggcgtgaacctggacgat
cgcaagatcgacttcgtgatggtggaagcgccactcaccggcaaggatggcaaagaggta
gtgcgcaagcccgccaagggtggtctgcgtcacgataaacgcaaagagagcaaggatagc
ggcaaatccgacaagggtggccgtgccaagcccagcaacagacgaccgagcaagaaggct
cgcgaaaagaccaagagcactaaatga
DBGET
integrated database retrieval system
