Aeromonas encheleia: NCTC12917_01790
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Entry
NCTC12917_01790 CDS
T06531
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ael
Aeromonas encheleia
Pathway
ael03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ael00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCTC12917_01790 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ael03400
]
NCTC12917_01790 (sbcB)
Enzymes [BR:
ael01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCTC12917_01790 (sbcB)
DNA repair and recombination proteins [BR:
ael03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCTC12917_01790 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC12917_01790 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC12917_01790 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
WSS_VP
MIOS_WD40
Motif
Other DBs
NCBI-ProteinID:
VEG96234
LinkDB
All DBs
Position
1:complement(1903920..1905347)
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AA seq
475 aa
AA seq
DB search
MSKTAQPGSEPTFYFHDYETFGISPARDRPAQFAGIRTDADFNVIGEPLVIYCKPPADYL
PEPEACLITGITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYR
NFYDPYAYAWQNGNSRWDILDMLRACYALRPEGITWAFDEEGKPSFRLEKLTVANGVAHA
NAHDALSDVLATIELAKLVKSAQPKLFDYLFSLRNKNKVKALIDVVTMKPLVHVSGMFSP
WQGCVSWVSPLAWHPTNQNAVIMVDLTRDPSPLIELSSDEIRERLYTKKEELGELAGIPI
KLVHINKCPVLAPAATLTPARADELGVNREQCRKSLDLLRAHPEVREKLVEVFNQEFAGS
NDGDPDTQLYAGFFGHGDKAALDLVRATPAELLGEREFAFSDPRLPEMLFRYRARNWPHT
LSEAEQKRWRLHCSDYFSSRLPDYVPRLEALAEQNQGNERNFAILKSLYHYLEDL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacagcacagccaggcagcgagcccaccttctacttccacgactacgagacc
ttcggcatcagcccggcgcgggacagaccggcgcagttcgctggcattcgcaccgatgcg
gatttcaacgtcatcggcgagccgctggtgatctactgcaagccgccggcggattacctg
cctgagcccgaggcctgcctcatcaccggcatcacgccgcagaaggcgatgaaggacggg
ctgtgcgaggcggacttcatccgccagatccacgagcagttcgccactccgaacacctgc
gtgctgggctacaacagcatccgcttcgatgacgaggtgacccgctacaccctgtatcgc
aacttctacgacccctatgcctacgcctggcagaacggcaactcccgctgggacatcctc
gacatgctgcgggcctgctatgccctgcgcccggaggggatcacctgggccttcgatgag
gaaggcaagccgagcttccggctggagaagttgacggtggccaacggcgtcgcccatgcc
aatgcccacgatgcgctgtcggacgtgctggccaccatagagctggccaagctggtgaag
agtgcccagcccaagctgtttgattacctgttttccctgcgcaacaaaaacaaggtgaag
gcgctgatcgacgtggtgaccatgaagccactggtccatgtctcgggcatgttctctccc
tggcagggctgcgtgagctgggtgtcaccactggcctggcatccgaccaatcagaatgcg
gtgatcatggtggatctcacccgtgaccccagcccgctcatcgagctctccagcgacgag
atccgcgagcggctctacaccaaaaaagaggagctgggggagctggcgggcattccgatc
aagctggtgcacatcaacaagtgcccggtgctggcccccgccgcgaccctgaccccggct
cgggccgacgagctcggggtcaaccgcgagcagtgccgcaagagcctggatctgctgcgg
gcccaccccgaagtgcgggaaaaactggtggaggtgttcaatcaggagtttgccggcagc
aacgacggcgaccccgatacccagctctacgccggtttctttggtcacggcgacaaggcc
gccctggatctggtgcgggccaccccggcggaactgctgggcgagcgggaatttgccttc
agcgatccgcgtctgccggagatgctgttccgctaccgtgcccgcaactggccgcacacc
ctgagcgaggcggagcagaagcgctggcgccttcactgcagcgactacttcagcagccgt
ctgccggattatgtgccacgcctcgaggcgctggcggagcagaaccagggtaacgaacgg
aactttgccatcctcaagagcctctatcactacctcgaagatctatga
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