Aeromonas sp. CU5: CK911_20330
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Entry
CK911_20330 CDS
T05327
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aem
Aeromonas sp. CU5
Pathway
aem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CK911_20330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aem03021
]
CK911_20330
Transcription machinery [BR:
aem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CK911_20330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CENP-B_dimeris
SQS_PSY
Dicty_REP
Motif
Other DBs
NCBI-ProteinID:
ATL94895
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All DBs
Position
complement(4474324..4476180)
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AA seq
618 aa
AA seq
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MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQIEDIIQMINDMGIQVVENAP
DADDLIMAEGGTADEDAAEAAAQALASVESEIGRTTDPVRMYMREMGTVELLTREGEIDI
AKRIEDGINQVQSSVAEYPEAITYLLEQYDKYEAEQLRLSDIISGFIDPNETEDVAPTAT
HIGSELSEDDLADEDEEEDEDEDEDGDNSDDEGDSGPDPEVAREKFGELRAQYEVTRLSI
QKNGRAHEDTQAAIAQLADVFRQFRLMPKQFDRLVNNMREMMERVRVQERIILKLCVEQA
KMPKKTFVAAFTNNECDSAWFEYQKQAGKAWSPRLVEMAEDVLRAIGKLQQIEEETGLSI
AQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPNPEELAMRMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLALPADAA
TSESLRNATRDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaccccgcagtctcagcttaaactcctcgttgccaaaggtaaagaacagggc
tacctgacctatgccgaggtgaacgatcacctcccgcaagacattgtcgattcagaccag
atcgaagacatcatccagatgatcaacgatatgggcattcaagtggttgaaaacgctccg
gatgccgatgaccttatcatggctgaaggtggtaccgccgatgaggacgctgccgaagca
gcggcccaggcactggcatctgttgaatctgagattggtcgtacgaccgatcccgtccgc
atgtatatgcgggaaatgggtaccgtcgaactgctgacccgtgaaggcgaaatcgacatc
gccaaacggatcgaagacggtatcaatcaggtacaaagctctgtggcagagtaccctgaa
gcaattacctatctgctcgaacagtacgacaagtacgaagccgagcaactgcgtctctct
gacatcatctcaggctttatcgatcctaacgaaaccgaagatgtggcgcctactgccacc
catatcggctctgaactcagcgaagatgatctggctgatgaggacgaggaagaggacgaa
gatgaagacgaggatggcgacaactcggatgatgaaggtgacagtggcccggatccggaa
gtcgctcgcgagaagtttggcgagctgcgcgcccagtatgaggtaacccgcctctccatt
cagaagaatggccgtgcgcacgaagatacccaggctgccatcgctcagctggccgatgtg
ttccgtcaattccgcctgatgcccaagcagttcgatcgcttggtcaacaacatgcgcgaa
atgatggagcgcgtccgcgtacaggaacgtatcatcctgaaactctgcgttgagcaggcc
aagatgccgaagaaaaccttcgtcgctgccttcaccaacaacgagtgtgatagtgcctgg
tttgagtaccagaagcaggctggtaaagcctggtctccccgtctggtcgagatggctgaa
gacgtactgcgcgccatcggcaaactgcagcagatcgaagaagagaccggtctgtcgatt
gcccagatcaaggatatcaaccgtcgcatgagcatcggtgaggcaaaagcccgccgagcg
aagaaagagatggttgaagccaacttgcgtctggttatctctatcgccaagaagtacacc
aaccgtggtctgcagttcctggatctgatccaggagggcaacatcggtctgatgaaggcg
gtagacaagtttgaataccgtcgtggctacaagttctcgacctatgccacctggtggatc
cgtcaggccattacccgctccatcgcggatcaggctcgtaccatccgtatcccggtacac
atgatcgagaccatcaacaagctcaaccgtatctcccgtcagatgctgcaggagatgggt
cgtgaaccgaacccggaagagctggctatgcgcatgggtatgccggaagacaagatccgc
aaggttctgaaaatcgccaaggagcccatctccatggagacgccgatcggtgatgatgaa
gattcccacttgggtgacttcatcgaagataccacccttgctctgccagcggatgcggcg
accagcgaaagcctgcgtaacgccactcgcgacgtgctggctggtcttactgcccgtgag
gccaaggtactgcggatgcgctttggtatcgacatgaacactgaccacacccttgaggaa
gtgggcaagcagttcgatgtcacccgtgagcgtattcgtcagattgaagccaaggcactg
cgtaaactgcgccacccgagccgctcggaagtgctgcgcagcttcctggacgaatag
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