Aeromonas salmonicida O23A: O23A_p0950
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Entry
O23A_p0950 CDS
T04990
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O23A_p0950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aeo03019
]
O23A_p0950
03009 Ribosome biogenesis [BR:
aeo03009
]
O23A_p0950
Enzymes [BR:
aeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O23A_p0950
Messenger RNA biogenesis [BR:
aeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O23A_p0950
Ribosome biogenesis [BR:
aeo03009
]
Prokaryotic type
rRNA helicases
O23A_p0950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ARW81697
UniProt:
A0AAN1EQ05
LinkDB
All DBs
Position
989295..991172
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AA seq
625 aa
AA seq
DB search
MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQ
TRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCP
STRQVALFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTR
LLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
AIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMGEELELYLNLVNELIEEDSADP
LELAAALAKLVQGDQPLLLDDSIPEPQFSSNDRGGRDFERRDGGSDFADRGDRPARRMPS
LEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFSTVD
LPKGMTADVLEVIKKARVCQRPLMITRYTEVPAGSNTAPRPPRSDRPFNKDRRPSGDRPF
NKSGERREGGFNKDRKFGGNKRRDS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctttttagtgagcttggactggccgcgcctgtattg
aaagcgctgcaagacgtgggctatgagcgcccgtcacctatccaggccgcagcaattccc
cacctcatggcgggacacgatctgctggggcaggcgcaaaccggtacagggaagaccgct
gcttttgccttgcctctgttgtctcgtctggaagctggtaaccgcaacacccaggttttg
gtgctggctccgacccgtgaactggccctgcaagttgccgaggcgtgccaacgttacgcc
aagcacatgcctgacttccacgtcctgcccatctacggtggctcatcttacgaaacccag
acccgcgccctgcgtcgtggtgcccaggttgtcgtgggtactccgggccgtgtgatggac
ctgatccgtcgcaagaacctggatctttccggtctgaaagccctggtgctggacgaagct
gatgaaatgctgcgcatgggtttcatcgatgacgtggactggatcatggaacagtgcccg
agcacccgtcaggttgcgctcttctctgccaccatgccggaccagatccgccgtgttgcc
cagaagcacctgaagcagcccaaagagatcaaaatcgtctccaagacctccactgcaccg
accatccgtcagcgctactggcaggtaaccggtctgcacaagctggacgccatgacccgt
ctgctggaagtcgagccgtacgaagccgtactggtctttgtgcgtaccaagaacgctgcc
gaagagctggctggcaaactggccgctcgtggccatgcttgtgaagcgctgcacggtgac
atcccgcagaagctgcgtgagcgtaccgttgacaagctgcgtcaaggccagctggatatc
ctgatcgccaccgacgttgtcgcccgtggtctggacgtcgagcgtatcacccacgtggtg
aactacgacattccttacgataccgaatcctacgttcaccgtatcggccgtaccggtcgt
gctggtcgcaagggggaggccatcctgtttgttgctccccgcgagcgtcgtatgctgcgc
gccatcgagcacgccactcgtcaggccatcgagccgatgaagatgccgagcaccgaggac
atcaaccagcaccgtatgaccaaattcaaagagcgcatccgggaaaccatgatgggcgaa
gagcttgagctctatctgaacctggtgaacgagctgatcgaagaagattctgccgatccg
ctggaactggctgccgccctggccaagctggttcaaggtgatcaaccgctgctgctggat
gactccatccctgagccgcagttcagcagcaatgatcgtggtggtcgtgatttcgaacgc
cgtgacggtggcagtgattttgctgaccgtggtgatcgtcctgcccgtcgcatgccgtcc
ctcgagccgcgtccgttgaaagacaacccggatgtcgagatggagcgctatcgcgtagac
gtgggtgcccatcacggtgtcaagccgggccagatcgtgggtgctatcgccaacgaagcg
aacatcgagagccgtttcatcggcaacatcgatatcgctgatgacttctccaccgtcgac
ctgcccaagggcatgaccgccgatgtactggaagtgatcaagaaagcccgtgtttgccag
cgtccgctgatgatcacccgctacacagaggtgccggctggcagcaataccgctccccgc
ccgccccgcagcgatcgtcctttcaacaaggatcgccgccccagcggtgaccgtccgttc
aacaagagcggggagcgccgtgaaggtggcttcaacaaggatcgcaagttcggtggcaac
aagcgccgcgacagctaa
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