Aeromonas salmonicida O23A: O23A_p1548
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Entry
O23A_p1548 CDS
T04990
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O23A_p1548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aeo03019
]
O23A_p1548
Enzymes [BR:
aeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O23A_p1548
Messenger RNA biogenesis [BR:
aeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O23A_p1548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ARW82291
LinkDB
All DBs
Position
1623980..1625371
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AA seq
463 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML
HRLMANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEA
IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER
QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMIG
RNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLKAIE
SLIGLSIPSEIQAGYEPSGKPTRQTLPGSKPVQNPPRDRGHANAKHNAKAPAKGRGKPKA
DGSSKQPAPVRQKDRGGVDAGLTPMRRLPRAQRDSYQDNSNEE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaacgaactgggtctgtcaccgcacattctgcgggccgtcaaggaattgggt
tacgaacagccaacccccatccagcagcaagccattccggctgtgctggcaggacaggat
gtgctgggcggcgcccagacaggcacaggtaaaacggccggtttcaccctgcccatgttg
caccgtctgatggccaaccatggccgtggtggccgtcgtcaggtacgcgccctggtgctg
accccgacccgtgaactggccgcccaggtgggcgaaagcatcatcaagtacgcccatcac
ctgccgtttcgcaccctgatcgcttacggcggcgtcagcatcaagcccaacctggaggcc
atcaagctcggcgtcgacatcctggtcgcgaccccgggccgcctgctggatctgctgacc
cagcgcgccctcaccctgaccgagctggaagtgctggtgctggatgaggcggatcgcatg
ctcgacatgggcttcatcaccgacattcgccgcatcatgaaggcgctgccggaagagcgg
cagaccctgctgttctccgccaccttctccaacgagatcaaggagctggccgacgatctg
ctgaagagcccgaccctgatcgaggtgagcccgagcaacagcacggccgagcaggtcaac
cagcgcatcatcaaggtcgaccgcgagcgcaagcgcgagctgctctcccacatgatcggc
cgcaataactggcaacgggtgctggtgttcgtgcgcaccaagcagatcgccgaccgtctc
gcccaccagatggaaaaagacggcctcaataccgtcgccatccacggtgacaagagccag
ggtgcacgcaaccgggcgctggcggattttcgggaaggcaaggtacgggtgctggtcgcc
accgacatcgccgcccgtggtctcgatatcgatcagctgccccatgtgatcaacttcgag
ctgccgcaagtggccgaggattatatccaccgcatcggtcgtaccggccgtgccggtcgt
ggcggcgaagccatctctctggtaagccaggatgaacaggatcagctcaaggccatcgag
tccctgatcggcctcagcataccgagcgagatccaggcaggctacgagccgagcggcaaa
ccgactcgccagaccctgccgggcagcaagccggtacaaaacccgccgcgggatcgcggc
catgccaacgccaagcacaatgccaaggcacccgccaagggcaggggcaagcccaaagcc
gatggcagcagcaagcaaccggcgccggtgcgccagaaggatcgcggtggcgtggacgca
gggctcaccccgatgcgccgcctgccccgggcccagcgcgacagctatcaggacaactcc
aacgaggagtaa
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