Aeromonas salmonicida O23A: O23A_p3989
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Entry
O23A_p3989 CDS
T04990
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O23A_p3989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aeo03021
]
O23A_p3989
03400 DNA repair and recombination proteins [BR:
aeo03400
]
O23A_p3989
Enzymes [BR:
aeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O23A_p3989
Transcription machinery [BR:
aeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O23A_p3989
DNA repair and recombination proteins [BR:
aeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O23A_p3989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
ARW84726
UniProt:
A0AAP3XNP6
LinkDB
All DBs
Position
4231724..4235752
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILANFFETIGFEVKDGKLMMD
LVPERLRGETATFDIVANGAVVVETGRRVTARHIRQLEKDAVTQIEVPVEYVVGKVAAKN
YTHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLSREDETGAGTL
TKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVVADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRTKWFELAIEDEAKQIELEQIAEQHIE
LKADFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMIKEQRALHE
MRDFLQQVYDLGEKDTKQVDIAELSDDDVRTLVGNLRKGLPVATPVFDGAKEHEIKALLK
LADLPESGQISLFDGRTGNVFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgatcgtgaagcagctgccggcaccgtcaaagacatcaaggaacaa
gaagtatacatgggcgaaattccgctcatgaccgagaacggcacctttgttatcaatggt
accgagcgggtaatcgtctcccagctgcaccgtagcccgggcgtcttcttcgaccacgat
aaaggcaaaactcattcatccggtaaggtgctgtataacgcccgcgttatcccctaccgt
ggttcctggctggacttcgagttcgatgcaaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaattgccggcttccattattctgcgcgccctggacttcagttccgaagaaatc
ctggccaacttcttcgagaccataggttttgaagtaaaagatggcaagttgatgatggat
ctggtgccggagcgcctgcgtggtgaaactgcgacctttgacatcgtggccaatggcgcc
gtggtggttgagaccggtcgtcgtgtgactgcgcgtcacatccgtcagttggaaaaagat
gccgttacccagattgaggtaccggttgagtatgttgttggcaaagttgctgccaagaac
tacacgcatccgcaaactggcgaaatggttgtgactgccaaccaggcattgagcctggaa
gcggttgccaacctgtcccaagccggcttcaagcacttcgaggttctgttcaccaacgaa
ctggatcacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgtttg
gaagccctggtcgaaatttatcgcatgatgcgtccgggcgagccgcccacccgtgaagca
gcagaacagctgttcgagaacctgttcttctcttccgagcgttacgacctgtctaccgta
ggtcggatgaagttcaaccgtcgtctgtcccgtgaagatgagaccggcgctggcactctg
accaaagacgacatagtcgaagtcatgaagcgcctgatcgacatccgtaacggcaatgac
gaagtggacgatatcgaccacctgggtaaccgtcgtatccgttctgtcggtgaaatggct
gaaaaccagttccgtgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctctcc
ctgggcgacctggacactctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcagtcaaagagttctttggttccagccagctgtctcagttcatggaccaaaacaacccg
ctctccgaagtcacccacaagcgccgtatctctgcgctgggcccgggcggtttgacccgt
gagcgtgccggttttgaagttcgagatgtgcacccgactcactacggtcgtctgtgccct
atcgagactcctgaaggtccgaacatcggtctgatcaactctctgtccgtgtactctcgt
accaacgagtatggtttcctcgagacaccgtaccgtaaagtcattgacggtgtgatcacc
gacgaagtggactatctgtctgctattgaagaaggcaagtacgtgatcgcacaggctaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgccacaaaggt
gaatccacctttatgaacgccgaccagatccagtatatggacgtgagcccgcagcagatc
gtatctgtggcagccgctctgatccccttcctggaacacgatgatgctaaccgagccctg
atgggttcgaacatgcaacgtcaggccgtaccgactctgcgtgctgacaagccgctggta
ggtaccggtatggaacgcgccgtggccgttgactccggtgtaaccgtagtggccaagcgt
ggcggcatgatcgactacgtcgatgcctcccgtatcgttatcaaggtcaacgaagatgag
ctgctgccaggcgaagccggcatcgacatctacagcctgaccaagtacacccgttccaac
cagaacacctgtatcaaccagcgtccttgcgtgatgttgggtgagccggtcatggccggt
gacgtggttgctgatggcccgtctaccgatctgggcgaactggcgctgggccaaaacctg
cgcgtcgcgttcatgccgtggaacggttacaactttgaagactcgattctggtgaatgag
cgtgttgttcaggaagatcgcctgaccaccatccatatccaggaactggcctgtatctcc
cgtgacaccaagctgggtccggaagagatcactgccgacatcccgaacgtgggtgaagcc
gcactgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacattctggtcggcaaggtaacaccgaaaggtgaaacccagctgacgccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcctccgatgtgaaggactcctccctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaagtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagctgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctgctg
gccgccggctacagcgaagatcgtctgaacaagctggatcgtaccaagtggtttgaattg
gccatcgaagatgaagccaagcagatcgagctggaacagatcgccgaacagcacatcgag
ctgaaagccgacttcgacaagaagttcgagaacaagcgtcgcaagattatccagggtgat
gatctggcgccgggcgtactgaaaatcgtcaaggtttacctggcagtcaagcgtcgcatc
caaccgggtgacaagatggcaggccgtcacggtaacaagggtgttatctccaagatctgc
ccggtcgaggatatgcctcatgacgaatacggccgtccggtcgacatcgtactgaacccc
ttgggcgtaccgtcccgtatgaacatcggtcagatccttgaagtacacctgggccttgct
gccaagggtatcggcgagaaaatcgaccgcatgatcaaggaacagcgcgcgctgcacgag
atgcgtgacttcctgcaacaggtctatgacctgggcgagaaggacaccaagcaagtggac
atcgccgagctgtctgacgacgacgtacgtaccctggtgggtaacctgcgcaagggtctg
ccggtcgctacacctgtctttgatggtgccaaagagcacgaaatcaaagccttgctgaag
ctggccgatctgccggaatccggtcagatctccctgttcgacggtcgtaccggcaacgtc
ttcgagcgtaaggtcaccgtgggttacatgtacatgctgaagctgaaccacttggtagac
gacaagatgcatgcgcgttctaccggttcttacagcctggttacccagcaaccgctgggt
ggtaaggcgcagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggaaatgctgaccgtcaagtctgacgatgtgaatggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtactgttgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
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integrated database retrieval system
