Aeromonas salmonicida O23A: O23A_p4490
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Entry
O23A_p4490 CDS
T04990
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O23A_p4490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aeo03021
]
O23A_p4490
Transcription machinery [BR:
aeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O23A_p4490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
CENP-B_dimeris
Dicty_REP
Motif
Other DBs
NCBI-ProteinID:
ARW85227
UniProt:
A0AAX3VXR8
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All DBs
Position
4739038..4740894
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AA seq
618 aa
AA seq
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MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQIEDIIQMINDMGIQVVENAP
DADDLIMAEGGTADEDAAEAAAQALASVESEIGRTTDPVRMYMREMGTVELLTREGEIDI
AKRIEDGINQVQSSVAEYPEAITYLLEQYDKYEAEQLRLSDIISGFIDPNEADDVAPTAT
HIGSELGEDDLADEDEDEDEDEDDDGDSSDDEGDGGPDPEVAREKFGDLRAQYEVTRLSI
QKNGRAHEDTQAAIAQLADVFRQFRLMPKQFDRLVNNMREMMERVRVQERIIMKLCVEQA
KMPKKTFVAAFTNNECETAWFEYQKQAGKAWSPRLLEMDEEVLRSIGKLQQIEEETGLSI
AQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPNPEELAMRMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLALPADAA
TSESLRNATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaccccgcagtctcagcttaaactcctcgttgccaaaggtaaagaacagggc
tacctgacctatgccgaggtgaacgatcacctcccgcaagacattgtcgactctgaccag
atcgaagacatcatccagatgatcaacgacatgggtattcaggtggttgaaaacgccccg
gatgccgatgaccttatcatggctgaaggtggtaccgccgatgaggacgctgccgaagca
gcggcccaggcactggcatctgttgaatctgagattggtcgtacgaccgatcccgtccgc
atgtacatgcgggaaatgggtaccgtcgaactgctgacccgcgaaggcgaaatcgacatc
gccaagcggatcgaagacggtatcaaccaggtacaaagctctgtggcagagtacccggaa
gcgattacctatctgcttgagcagtatgataaatacgaagccgaacagctgcgtctgtcc
gatatcatctcaggttttatcgatcctaacgaagccgatgatgtagcaccgactgctacc
catatcggttccgaactcggcgaagacgatctggccgacgaagacgaagacgaagacgaa
gatgaagacgacgatggtgacagctcggatgacgaaggtgacggtggtcctgatccggaa
gttgctcgcgagaagtttggtgatctgcgtgcccagtatgaggtaactcgcctctccatt
cagaagaatggccgtgctcacgaagatacccaggctgcgattgcccagctggccgatgtg
ttccgtcaattccgcctgatgcccaagcagttcgatcgcctggtcaacaatatgcgcgaa
atgatggagcgcgtccgcgtgcaggaacgcatcatcatgaagctctgcgttgagcaggcc
aaaatgccgaagaaaaccttcgttgcggccttcaccaacaacgagtgtgaaactgcctgg
tttgaataccagaaacaggctggtaaggcttggtctccacgtctgcttgagatggacgaa
gaagtactgcgttccatcggcaaactgcagcagattgaagaagagacggggctgtccatc
gcgcagatcaaggacatcaaccgtcgcatgagcattggtgaggccaaggcccgccgtgcg
aagaaagagatggttgaggcgaacttgcgtctggttatctctatcgccaagaagtacacc
aaccgcggtctgcagttcctggatctgatccaggagggcaacataggtttgatgaaagcg
gtagacaagtttgaataccgtcgcggctacaagttctcgacctatgccacctggtggatc
cgtcaggccattacccgctccattgcggatcaggcccgtactatacgtatcccggtacac
atgatcgagaccatcaacaagctcaaccgtatctcccgtcagatgctgcaggagatgggt
cgtgaaccgaacccggaagagctggccatgcgcatgggcatgccggaagacaagatccgc
aaggtactgaaaattgccaaagagcctatctccatggagacgcccattggtgatgatgaa
gattcccatctgggcgacttcatcgaagataccaccctggccctgccagcggatgcagcc
accagcgaaagcctgcgcaacgcgacccgtgaagtgctggccggtctgaccgctcgtgaa
gccaaggtactgcggatgcgtttcgggatcgacatgaacactgaccacacccttgaggaa
gtgggcaaacagttcgacgttacccgtgagcgtattcgccagatcgaagccaaggcgctg
cgcaagctgcgtcatccgagccgctcggaagtgctgcgcagcttcctggacgaatag
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