Aequorivita marisscotiae: QCQ61_08870
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Entry
QCQ61_08870 CDS
T10155
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aequ Aequorivita marisscotiae
Pathway
aequ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aequ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QCQ61_08870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aequ03021
]
QCQ61_08870 (rpoC)
03400 DNA repair and recombination proteins [BR:
aequ03400
]
QCQ61_08870 (rpoC)
Enzymes [BR:
aequ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QCQ61_08870 (rpoC)
Transcription machinery [BR:
aequ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QCQ61_08870 (rpoC)
DNA repair and recombination proteins [BR:
aequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QCQ61_08870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
WGF94140
UniProt:
A0ABY8KXM9
LinkDB
All DBs
Position
1938542..1942840
Genome browser
AA seq
1432 aa
AA seq
DB search
MNRNKENTVQKFDKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKYEGGEDVKKMDFLTEEEYLAILDSIPAENQYL
EETDPNKFIAKMGAECLIDLLQRIDLDTLSYNLRHKANNETSKQRKTEALKRLQVVEALR
DANKNRENKAEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVLKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILECQLLMLASHNILNPANGSPVAVPSQDMVLGLYYMTKLKKTMGDVV
VKGEGLTFYSAEEAIIAYNEGRVDLNAEIKIRTEDFNEEGVLAKQIITTTLGRVIFNEKV
PVEAGFINEVLTKKSLRDIIGKILKVTSVPATANFLDEIKTLGYKYSFEGGLSFSLGDII
IPAEKQTMIDNANSQVDGIINSYNMGLITNNERYNQVIDIWTATNAELTELSMKRIREDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINIEDCYTLRGIEVSALKKNEE
VVETLGARIVGRTALNDVVNPLTKELLVASGDHITEEIADAIEASPLDSVEVRSALTCEA
KKGICSQCYGRNLATNKMVQSGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENKL
IVRFDGKAEIEDLKTVKGEDNQGNTVDIVISRTSEIKLVDKKTGITLSTNNIPYGSTLNV
KDGDTLKAGDVVCTWDPYNGVIISEFAGKIKYENIVQGVTYQVEIDEQTGFQEKVISESR
DKKRIPTLQILGKKDEVIRSYNLPVGAHIMVDDGDKIKIGKVLVKIPRKSAKAGDITGGL
PRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGELKKYLVKLSNQILVQ
ENDYVRAGMPLSDGSITPEDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVRQ
MMRKVKIEDPGDTTFLEDQLAHKDDFIEENDKIYGMKVVTNAGESENLKEGQILSPRMLR
DENSLLRRNDKELVEARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAVA
GKVDTLEGLKENVIVGHKIPAGTGMRKYDTIIVGSKQELEEMNQAKQEVNYN
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaataaagaaaacacagtacagaaattcgataagatttctattggtttggct
tctcctgaatctattttggcagaatcacgtggcgaagtattaaagcccgaaacaataaac
taccgtacgcacaaaccagagcgcgacggtcttttctgtgagcgtatttttggccctgta
aaggactacgaatgtgcctgtggtaaatataaaagaatccgctacaaaggtattgtttgc
gaccgatgtggtgttgaagtaacggaaaagaaagtacgtcgtgaccgtgtggggcatatt
aatttagttgttcccgtagcacacatttggtacttccgtagccttccaaacaaaattggc
taccttcttggattgccgtctaagaaactggatatgattatttactacgaacgctatgta
gtaattcagccaggtattgctaaatatgaaggaggagaagacgttaaaaaaatggatttc
cttaccgaagaagaatatctagcaattctagattcaattccggcagaaaaccaatatttg
gaagaaaccgatccaaataaatttattgcgaaaatgggagcagagtgcttgatcgatctt
ttacagagaattgatttagatacactgtcatacaaccttcgtcataaagcaaataacgaa
acttctaaacaacgtaaaaccgaagcgttaaaacgtcttcaagttgtagaagcacttcgc
gatgcaaataaaaaccgcgaaaataaagccgaatggatgattatgaaagtagttccggtt
attccaccagaattacgtccgttggtgccacttgatggcggtcgtttcgcaacctcagat
ttaaatgatctttaccgaagagtaattatccgaaacaaccgtttaaaacgattgatggag
ataaaagctcccgaagtaattctccgaaacgagaaacgtatgcttcaggaatcggtagat
tcattgtttgataacacacgtaaatcttccgcagtaaaaacagatagtaacagacccctg
aaatctctttcagattcattaaaaggaaaacagggtcgtttccgtcaaaacttgcttggt
aagcgtgtagattattcagcacgttcggtaattgttgtaggcccagaattaaaattattt
gaatgtggtcttccaaaagatatggcggccgagctttacaaaccttttgtaatccgtaaa
ttgattgaaagaggaattgtaaaaaccgtaaaatctgcaaagaaaattatagacaaaaaa
gagcctgtagtttgggatattcttgaaaatgtgttaaaaggccaccctgttatgcttaac
cgggcccctacattgcacagattgggtattcaagctttccagcctaaattaattgaagga
aaggcaatccagttgcacccattggtatgtaccgcgtttaacgcagattttgatggtgac
caaatggcggttcaccttccacttgggccagaggcaattttggaatgtcaacttttaatg
ttggcttctcacaacattttaaacccagcaaatggttcgccagttgcggttccttcacag
gatatggttttgggtctgtattatatgaccaaattgaaaaaaaccatgggcgatgtggtt
gtaaaaggcgaagggcttaccttctattcagccgaggaagcaataattgcttataacgaa
ggcagagtagatcttaatgccgagattaaaattcgtaccgaagacttcaacgaagaaggc
gtattagctaaacaaattattactactactttaggaagagtaatctttaacgaaaaagtg
cctgttgaggctggttttataaatgaagtattgaccaaaaaatcacttcgtgatattatt
ggtaaaatattgaaagtaacatcggtacctgctacggctaatttccttgatgaaattaaa
accttggggtataagtactcttttgaaggtggcttgtcctttagcttgggcgatattatt
atcccagccgaaaagcaaactatgatagacaatgccaattcgcaagtagatggcattatc
aatagctataacatggggcttattaccaataacgaacgttataaccaggtaattgatatt
tggacagcaaccaacgccgaacttaccgaactttctatgaaacgaattcgcgaagatcag
caaggtttcaactctgtgtatatgatgcttgattctggtgcgaggggttctaaggagcaa
attcgccagttaacaggtatgcgtggtttgatggctaagcctaaaaaatctaactccgga
ggtggtgaaattattgaaaacccaattctttccaactttaaagaaggtctttcaattctt
gaatactttatctctacccacggggcgcgtaaaggtcttgcagataccgctcttaaaacg
gcagatgcagggtacttaacacgtagattagtagatgtttcgcaagatgttatcattaat
attgaagactgctatacgcttcgtggcattgaggtttcggccttaaagaaaaacgaagaa
gtagttgaaactcttggagccagaatcgtagggcgtacagctcttaacgatgttgtaaac
ccacttaccaaggaattattggtggcttctggcgaccatattacagaagaaattgccgat
gcaattgaagcgtctcctttagacagtgttgaagtgcgttctgcgcttacttgtgaagct
aaaaaaggtatttgttcgcagtgctacggtcgtaaccttgctaccaataaaatggtacaa
agtggcgaagctgtaggtgttgtggcggcacaatctattggtgagccaggaacacagctt
acactacgtaccttccacgttgggggtattgcaggtaacatttccgaagaaaacaaatta
attgtaagatttgacggaaaagccgaaattgaagatcttaaaaccgttaaaggcgaagat
aatcaaggcaatacagtagatattgttatttctcgtacttctgaaataaaacttgttgat
aagaaaacaggaattacactaagtaccaataacattccatacggttctacacttaatgtg
aaggatggcgatacgctaaaagcgggcgatgtagtatgtacttgggatccttataacggg
gtaattatttcggaatttgctggaaaaattaaatacgaaaacattgttcaaggggtaacc
tatcaagttgaaattgatgagcaaactggtttccaagaaaaggtaatttcagaatccaga
gataaaaaacgtattccaaccctgcaaattttagggaagaaagacgaagtaatccgtagc
tataacttgcctgttggcgcccacattatggtggatgacggcgacaagattaagattggt
aaagtactggtgaaaattcctcgtaagtctgcaaaagcaggtgatattacgggtggtctt
ccgcgagttaccgaactttttgaagcgcgtaacccgtcaaatccagcagtagttagcgag
attgatggtgtggtttctttcggaaaaataaaacgtggtaaccgcgagattatcgttgag
tctaaattaggcgaattgaaaaagtacttggttaaactttcaaaccaaattctcgttcaa
gaaaacgattatgttcgtgcaggaatgccattatcagacggatctattacaccagaagac
attcttcgcattaaaggcccatctgcagtacagcaatatcttgtgaacgaagttcaagag
gtttaccgtctgcaaggggtaaagattaacgacaaacactttgaggttgttgttcgtcaa
atgatgcgaaaagtgaaaattgaagatccgggagatacaacctttttggaggatcaattg
gcgcataaagacgattttattgaagagaacgataaaatctacggaatgaaagtagttacc
aatgcaggagaatctgaaaacctaaaggaaggacagattttatcgccacgaatgcttcgt
gatgaaaactcgttgttgagaagaaacgacaaagaacttgttgaagctcgcgatgtgatt
accgcaacggcaactccagtacttcagggtattacgagagcgtccttacagaccaaatcg
tttatctctgcagcttccttccaggaaaccaccaaggtattaaacgaagccgcagtagct
ggtaaagtagatacgttggaaggcttaaaggaaaacgttattgtaggtcataaaatacca
gccggtaccggtatgcgtaagtatgatactataatcgtgggttctaaacaagagctggaa
gaaatgaatcaagcaaagcaagaagtaaattataattaa
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integrated database retrieval system
