KEGG   Aequorivita marisscotiae: QCQ61_12495
Entry
QCQ61_12495       CDS       T10155                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aequ  Aequorivita marisscotiae
Pathway
aequ03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aequ00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    QCQ61_12495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aequ03400]
    QCQ61_12495 (ligD)
Enzymes [BR:aequ01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     QCQ61_12495 (ligD)
DNA repair and recombination proteins [BR:aequ03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     QCQ61_12495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: WGF92021
LinkDB
Position
complement(2786528..2788957)
AA seq 809 aa
MGLNEYIKKREFNKTPEPPGDLDKSNGLRFVIQRHQARHLHYDLRLEMEGVLKSWAVPKG
PSLNPTDKRLAIMTEDHPVKYLSFQGTIPKGNYGAGVMSIWDQGTYSVLKSEVGSDPVKQ
LKNGDLKIEFFGEKIKGSFALVRTARGEEKNQWLLIKKTDKYATQLHYDAEIFAATPQSK
TVASEISLNIDQFVKPMLASPAKNIFKDPQWVFELKWDGYRMLSHIKNGEVSLYSRNGVM
YNTKFALLQNELQNIPHNCILDGEVVIVNKQGKPNFQKLQKYDPNKTVGELRYYVFDLLH
LNGHDTIALSLLERKSLLPDILEGLKHVYYCDHIEGMGPTLYNRAIAAGMEGVIAKKADS
TYTPGYRSEKWLKIKDSTTEEAIICGYTESESGGSIFGSLILGMYKGEKLVYVGNCGSGF
SNKEQRELLKKLKAIETDINPFAKKLPLKGRIPHFVAPKLICEVKFSEWTKNGLMRHPVY
KSLRNDKEPAEISPQTVKEGSVSNSKKNSSTLEVDGFHVPLTNLEKVYWPDAGYTKYDLI
DYYLNISDIILPYLIDRPQNLHRHPNGIRNASFYQKDNETLPEWVKTEEIYSKSSKKNIA
YLLCQNVATLLYMANLGCIEINPWNATIQNLERPTYTVIDIDPSAKNTFEDVIEVALAVK
EVLDIANIEGYPKTSGSSGLHIYIPLDNKYSFEEARDFTKLLCYFVQEKLPKFTTMERAL
TKRKGKIYLDYLQNRRGQTLAAPYCVRPKEGAPVSAPLLWSELTSGLSILDFTIKTMPER
IKKMGDIFSPVLQTGISMEAAIDNLNSEK
NT seq 2430 nt   +upstreamnt  +downstreamnt
gtgggattgaacgaatacataaagaaacgtgaattcaacaaaacccctgagccgccgggc
gatttagataaatctaacgggttgcgttttgtaatacaaaggcaccaagcgcgccacttg
cattatgacctgcgtttggaaatggaaggcgttcttaaaagttgggcagtacctaaaggg
ccatccttaaatcctacggacaaacgtttggcgattatgaccgaggatcatccggtaaaa
tatttaagctttcagggcactatcccaaaaggcaactatggcgccggggttatgagcatt
tgggaccagggaacatatagcgtattaaaaagtgaagtgggaagcgaccccgtaaaacaa
ttaaaaaacggcgatttaaaaattgaattctttggggaaaaaattaaagggagttttgca
cttgtacgcactgcgcgaggcgaagagaaaaaccaatggctactgattaaaaaaacagat
aaatacgcaacccaactgcattacgacgccgaaatttttgcagccacaccacaatctaaa
accgttgcaagtgaaatttcattaaatatagatcaatttgtaaagcccatgcttgccagt
ccggcaaaaaacatttttaaggatccacaatgggttttcgagttaaaatgggatggatat
agaatgttatctcatataaaaaatggcgaagtgtcgctttattcgcggaatggggtaatg
tacaatactaagtttgcactcttgcaaaacgaattgcaaaacattccacataattgtatt
ctggatggcgaagtagttattgtaaataaacaaggaaagcccaattttcagaaacttcaa
aagtacgatcctaataaaaccgttggggaattgcgctattacgtttttgatttgcttcac
ttaaacggtcacgatactattgccttatcgttacttgaaagaaaaagtctgcttcccgat
attttagaaggtttaaagcacgtttattattgtgaccatattgaaggtatggggccaaca
ctttacaaccgggctattgctgcaggtatggaaggggtaattgccaaaaaggccgattct
acttatacacctggttatagaagtgaaaagtggttaaaaataaaagatagtactactgaa
gaagccataatttgtggttacaccgagtctgagagcggaggaagtattttcggctccttg
attttagggatgtataaaggcgaaaagttggtgtatgttggtaattgtggttctggtttt
tcaaataaagagcaaagggaattattaaaaaagttgaaagctatagaaaccgatataaac
ccatttgccaaaaaattgccgttaaaaggaagaattccacattttgtagctccaaaatta
atctgcgaagtaaaattttctgagtggaccaaaaacggtctaatgcggcatcccgtttat
aaaagcctgcgaaatgataaggaacccgcagaaataagtccgcaaactgtaaaagaagga
tcagtttctaattcgaaaaaaaattcttcaaccttagaagtagatggttttcatgtgcct
cttactaatttggagaaggtgtattggccggatgccggatataccaaatacgatttaata
gattactatttaaatatttcagacatcatattgccctacctcatagatagacctcaaaat
ttacacagacatcccaatggtattcgcaatgcctctttttatcaaaaggacaatgaaact
ttgccggaatgggtaaaaacggaagaaatatattctaaatcgtcaaagaaaaacattgcg
tatttgttgtgccaaaatgtggcaacgttgctttatatggcgaatttagggtgtattgaa
ataaatccttggaacgcaaccattcaaaatttggagcgccccacatacacggttatagac
atagatccttcggctaaaaacacttttgaagatgtaattgaagtagctcttgccgtaaaa
gaagttttggatattgcaaatatagaaggctatccaaaaacttcgggttcctcggggttg
catatttatatccccttagataacaaatacagctttgaagaagcgcgggattttacaaaa
ctgctgtgttattttgttcaagaaaaactcccaaagtttacaactatggaacgcgcatta
acaaaacgcaaagggaaaatatacttggattatttgcaaaaccgacgcggacaaaccttg
gcagcgccctattgtgtacggccgaaagaaggagctccggtttctgcaccgctgctttgg
agcgaactaacttctggattatctattttggactttacaataaagaccatgcccgaacga
attaaaaaaatgggcgatattttttcccctgtattacaaacaggtatttcaatggaggcc
gcaattgataatttgaattcagaaaagtaa

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