Aeromicrobium erythreum: AERYTH_04835
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Entry
AERYTH_04835 CDS
T04236
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aer
Aeromicrobium erythreum
Pathway
aer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AERYTH_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aer03400
]
AERYTH_04835
Enzymes [BR:
aer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AERYTH_04835
DNA repair and recombination proteins [BR:
aer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AERYTH_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALX04071
UniProt:
A0A0U3TEX6
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All DBs
Position
1007740..1011246
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AA seq
1168 aa
AA seq
DB search
MDLHALLSPHLNGPLAEALAERPRTLSVQGPAAVQPFVTRALADASTVLAVTSTAREADE
LAADVAVLLGDEAVAVYPAWETLPHERLSPRSDTVGRRLAVLRRLVHPGPGAPPVRVVVA
PVRSVLQPQVRGLADLRPVELVVGQQAPLDDVVRDLAAAAYVRVDLVERRGEFAVRGGIV
DVFPPTEAHPVRVDFWGDEVEEIRSFSVADQRTTDPVERLWAPPCRELLLTDEVRQRAKA
LAVEHPSLGELFGKLAEGHAVEGMESLSPILVEEMELLVELLPDDAVVVVHEPEKVKARA
ADLNATNEEFLQASWAAAATGAEAPIDLGSAAFRELDDVRDVALARGSSWWSVSPFGLDD
EETVAATAEAAPLYRGDTEAAVADVRAWLGEGRLVVLATPAAGQAQRTVEWLAEHDVPAT
IVDAAGDAGSDGALPAAGTGVVAVVVADLSHGLVAPRAVLLTHDDLVGQRAAERPDRSSM
PARRRKQVDPLELKAGDHVVHEQHGVGRYVELVNRTVQGAAREYLVIEYAPSKRGQPGDR
LFVPMDQLDQVSRYVGGESPSLDKLGGADWTARKNKARKAVRQIAGELIKLYAARQSTKG
HAFGPDTPWQAELEDAFAFVETPDQLVTIDEVKRDMERSVPMDRLVCGDVGYGKTEIAVR
AAFKAIQDGKQVILLVPTTLLVQQHYATFAERFGQFPVTIRPLSRFQTEKESQETLAGLA
DGSVDLVVGTHRLLQPGVQIKDLGLVIVDEEQRFGVEHKEALKHLRAAVDVLAMSATPIP
RTLEMAVTGIREMSTIATPPEERHPVLSFIGAYDDKQVAAAIRRELLREGQAFFIHNRVQ
SIDKVVKRLAELVPEARVAAAHGQMGEQALEKVMVDFWEKRYDVLVCTTIVESGLDVSNA
NTMIIERADTLGLSQLHQLRGRVGRGRERAYAYFLYPPDKPLTETAHDRLATIAQHSELG
GGMQVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGDGGEDGLPGGRE
VKLELPVEAHLPHDYVPSERLRLEMYKRLADVRSDADVEELRAELVDRYGEPPEVTEVLL
DVARLRVAVRTAGLTEVTSAGSQIRFGGVDLPESAQMRLRRVYPKSLYKPATHVALVPAP
KTAPVGGRPLRGRELLQWVATVVETLTA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggacctccacgccctcctctcgccccacctgaacggccctctggccgaggcgctcgcc
gagcgtccgcgcaccctctcggtgcagggccccgccgcggtgcagccgttcgtgacccgc
gcgctggccgacgcctccaccgtgctggccgtcacctccaccgcgcgcgaggccgacgag
ctcgcggccgacgtcgccgtgctgctcggcgacgaggccgtcgccgtctaccccgcgtgg
gagacgttgccgcacgagcggctgtccccgcgctcggacacggtcggtcgtcgcctggcg
gtcctgcgccgtctcgtgcacccgggaccgggcgcgccgccggtgcgggtcgtggtggcg
ccggtgcgctcggtgctgcagccgcaggtcaggggcctggccgacctgcgccccgtcgag
ctggtggtcggccagcaggcgccgctcgacgacgtcgtccgcgacctcgccgccgctgcc
tacgtgcgggtcgacctggtggagcgtcggggcgagttcgcggtgcgcggcggcatcgtc
gacgtcttccccccgaccgaggcgcaccccgtgcgagtcgacttctggggcgacgaggtg
gaggagatccgctcgttctccgtcgcggaccagcgcacgaccgatcccgtcgagcggctg
tgggcgcctccgtgccgcgagctgctcctgaccgacgaggtccgtcagcgcgccaaggcg
ctcgccgtcgagcacccgtcgctcggcgagctgttcggcaagctggccgaggggcacgcc
gtcgagggcatggagtcgctctcgccgatcctggtcgaggagatggagctcctcgtcgag
ctgctccccgacgacgcggtcgtcgtcgtccacgagccggagaaggtcaaggcgcgcgcc
gccgacctcaacgcgacgaacgaggagttcctgcaggcgtcgtgggcggcagccgcgacc
ggtgccgaggcgccgatcgacctcggctccgcggccttccgcgagctcgacgacgtccgc
gacgtcgcgctcgcccgagggtcgtcgtggtggagcgtgtcgccgttcggcctcgacgac
gaggagaccgtcgccgccaccgccgaggcggccccgctctaccgcggcgacaccgaggcc
gcggtcgccgacgtccgcgcctggctcggggaaggacgcctcgtcgtgctcgcgacgccc
gcggccggccaggcccagcgcaccgtggagtggctggccgagcacgacgtgcccgcgacg
atcgtcgacgccgccggcgacgcagggagcgacggtgcgctgccggcggccggcactggc
gtggtcgcggtcgtcgtcgccgacctgagccacggcctggtcgcgccgcgcgccgtcctg
ctcacccacgacgacctcgtcggccagcgcgccgccgagcgtccggaccgctcgagcatg
cccgcgcgccggcgcaagcaggtcgacccgctcgagctgaaggccggcgaccacgtcgtg
cacgagcagcacggcgtggggcgctacgtcgagctcgtcaaccgcaccgtgcagggcgcg
gcccgcgagtacctcgtgatcgagtacgcgccgagcaagcgcgggcagccgggcgaccgg
ctgttcgtcccgatggaccagctcgaccaggtcagccggtacgtgggcggcgagagcccg
agtctcgacaagctgggcggcgccgactggaccgcgcgcaagaacaaggcgcgcaaggcc
gtccggcagatcgccggcgagctgatcaagctgtatgccgcccgccagtcgacgaagggg
cacgcgttcgggcccgacaccccgtggcaggccgagctcgaggacgcgttcgccttcgtc
gagacgccggaccagctcgtgaccatcgacgaggtcaagcgcgacatggagcgctcggtg
cccatggaccgcctggtctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgg
gccgccttcaaggccatccaggacggcaagcaggtcatcctgctggtgcccacgaccctg
ctcgtccagcagcactacgcgacgttcgcggagcgcttcgggcagttcccggtcaccatc
cgcccgctctcgcggttccagaccgagaaggagtcgcaggagacgctcgccggtctggcc
gacggcagcgtcgacctcgtcgtcgggacccaccgcctgctgcagcccggtgtccagatc
aaggacctcggtctcgtgatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggag
gcgctcaagcacctgcgcgccgccgtcgacgtgctggcgatgtcggcgacaccgatcccg
cgcaccctcgagatggcggtcaccggcatccgggagatgtcgaccatcgccacgccgccg
gaggagcggcaccccgtgctgtcgttcatcggcgcgtacgacgacaagcaggtggccgcc
gcgatccgccgcgagctgctgcgcgagggacaggcgttcttcatccacaaccgcgtccag
tcgatcgacaaggtcgtgaagcggctggccgagctcgtccccgaggcgcgcgtggcggcc
gcccacggccagatgggcgagcaggcgctggagaaggtcatggtcgacttctgggagaag
cgctacgacgtgctggtctgcacgacgatcgtcgagtcgggcctcgacgtgtccaacgcc
aacacgatgatcatcgagcgggccgacacgctcggcctctcgcagctgcaccagctgcgc
ggccgggtcgggcgaggtcgcgagcgggcctacgcctacttcctgtacccgcccgacaag
ccgctgaccgagaccgcccacgaccggctcgcgaccatcgcgcagcactcggagctgggc
ggcggcatgcaggtcgccatgaaggacctcgagatccgcggcgcgggcaacctgctgggc
ggcgagcagtcgggccacatcgccgacgtcggcttcgacctgtacgtgcgcctcgtgggc
gaggccgtggcggagttccgcggcgacggcggcgaggacggcctgccgggcggccgcgag
gtgaagctcgagctccccgtggaggcccaccttccccacgactacgtgccgagcgagcgg
ctgcgcctggagatgtacaaacggctcgccgacgtccgctccgacgccgacgtcgaggag
ctgcgtgcggagctggtcgaccggtacggcgagccgccggaggtcacggaggtgctgctc
gacgtcgcacgtctgcgcgtggcggtgcgcaccgccggcctcacggaggtcacgtcggcc
ggctcccagatccgcttcggcggcgtcgacctcccggagtcggcccagatgcggctgcgc
cgggtctacccgaagagcctgtacaagccggcgacccacgtcgcgctcgtgcccgcgccg
aagacggcacccgtcggcgggcgtcccctgcgcggtcgcgagctgctgcagtgggtggcc
acggtcgtggagaccctgacggcctga
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