Aeromicrobium erythreum: AERYTH_14230
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Entry
AERYTH_14230 CDS
T04236
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aer
Aeromicrobium erythreum
Pathway
aer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AERYTH_14230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aer03019
]
AERYTH_14230
03009 Ribosome biogenesis [BR:
aer03009
]
AERYTH_14230
Enzymes [BR:
aer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AERYTH_14230
Messenger RNA biogenesis [BR:
aer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AERYTH_14230
Ribosome biogenesis [BR:
aer03009
]
Prokaryotic type
rRNA helicases
AERYTH_14230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALX05769
UniProt:
A0A0U4BD43
LinkDB
All DBs
Position
complement(2979529..2981295)
Genome browser
AA seq
588 aa
AA seq
DB search
MGLGDELVEVLGGLGYEAPTPIQEAAVPALLAGRDVVGLAQTGTGKTAAFALPILEKIDP
DRASTQALVLAPTRELALQVCEAMTSYTPRSRRIRVLPVYGGQGYGAQLAGLERGAHVVV
GTPGRVMDHLDRGSLDLSGLDHLVLDEADEMLAMGFAEDVERILADTPEYKQVALFSATM
PPAIRRLAKRYLHDPADIATPQARSSTSTVRQRWIPVSHHAKLDALTRLLEVESGDAMII
FVRTKSATEELAERLRSRGFSAAAINGDLVQAQRERTVTALKNGSLDILVATDVAARGLD
VDRITHVVNYDIPHDPEAYVHRVGRTGRAGRSGEAILFVTPRERRLLSAIEKVSGRPVEE
TGVPSVDEVNARRTAKFAQAITDSMGSAQFHAFRGLVEDYVREHDVEMLDVAAALAVMST
DDKEFFLRPDPPKKERRERPERQDRPARDAGDRPARPSKDGWAPYRIAVGKRHKVTPSMI
VGALANEGGLRRADFGKITLGIDHAVVELPQDLPPAVFEALADTRISGRRIDLQADRGAR
GGRSSRDDRPTAHRKGSGAPGGKGKGGQRGSWSKDGESPRKPRHPKGH
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
ctgggcctgggcgacgagctggtggaggtgctcggcgggctcggctacgaggcaccgacg
cccatccaggaggcggcggtgccggccctcctcgccggccgcgacgtcgtcggtctcgcg
cagacgggcaccggcaagacggctgcgttcgcgctgccgatcctcgagaagatcgacccc
gaccgcgcctccacgcaggcgctcgtgctcgcgcccacccgcgagctggccctgcaggtc
tgcgaggcgatgacgtcgtacacgccgcggtcgcgtcgcatccgcgtgctccccgtctac
ggcgggcagggctacggcgcccagctggccgggctcgagcgcggtgcccacgtcgtcgtc
ggcacgccgggtcgcgtcatggaccacctcgaccgcggcagcctcgacctctccgggctc
gaccacctcgtgctcgacgaggccgacgagatgctcgcgatggggttcgcggaggacgtc
gagcggatcctcgccgacacccccgagtacaagcaggtcgcgctgttctcggccacgatg
ccgccggccatccgccgcctcgcgaagcgctacctgcacgaccccgccgacatcgcgacg
ccgcaggcccgctcgtcgacgagcacggtgcgtcagcgctggatccccgtctcgcaccac
gcgaagctcgacgcgctcacgcgtctgctcgaggtggagagcggcgacgccatgatcatc
ttcgtccgcacgaagtcggccaccgaggagctcgcggagcgactgcgctcgcgcgggttc
tccgcggccgccatcaacggcgacctcgtccaggcgcagcgcgagcggaccgtgacggcg
ctgaagaacggctcgctcgacatcctcgtcgccaccgacgtggccgcgcgcggtctcgac
gtcgaccgcatcacccacgtcgtcaactacgacatcccccacgaccccgaggcgtacgtg
caccgggtcggccgcacgggccgtgccgggcgcagcggcgaggcgatcctgttcgtcacc
ccgcgcgagcgtcggctcctgtcggcgatcgagaaggtgtcgggacgcccggtcgaggag
accggcgtgcccagcgtcgacgaggtcaacgcgcgccgtaccgccaagttcgcgcaggcg
atcaccgacagcatgggctccgcccagttccacgccttccggggcctcgtggaggactac
gtgcgcgagcacgacgtcgagatgctcgacgtggccgcggcgctcgcggtgatgagcacg
gacgacaaggagttcttcctgcgtccggacccgccgaagaaggagcggcgtgagcgcccg
gagcggcaggaccggccggcgcgcgacgccggtgaccgccctgcgcgcccgtcgaaggac
ggctgggcgccgtaccggatcgccgtcggcaagcggcacaaggtgacgccgtcgatgatc
gtcggcgcgctcgccaacgagggcggtctgcgtcgcgccgacttcggcaagatcaccctc
ggcatcgaccacgccgtcgtcgagctcccgcaggacctgcccccggcggtgttcgaggcg
ctcgccgacacgcggatctccggacgtcgcatcgacctgcaggccgaccgtggcgcccgg
ggtggacgctcctcgcgcgacgaccggccgaccgcgcaccgcaagggctcgggcgcaccg
ggcggcaagggcaagggcggtcagcgcggcagctggtcgaaggacggcgagtcgccccgc
aagccccgccaccccaagggtcactga
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