Aeromonas sp. CA23: CK910_16035
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Entry
CK910_16035 CDS
T10911
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aero Aeromonas sp. CA23
Pathway
aero03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aero00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK910_16035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aero03019
]
CK910_16035
Enzymes [BR:
aero01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CK910_16035
Messenger RNA biogenesis [BR:
aero03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CK910_16035
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATL99809
LinkDB
All DBs
Position
complement(3440062..3441465)
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AA seq
467 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML
HRLLANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA
IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER
QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMIG
RNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLKAIE
SLIGLSIPSEILAGYEPSGKPTRQTLPGSKPVQNPPRDRGHANAKHNAKAPAKGKGKPGA
GKPKADGSKQPAPARQKDRGGVDAGLTPMRRLPRAQRDSYQDNSNEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaacgaactgggtctgtcaccgcatattctgcgggccgtcaaggaattgggt
tacgaacagccaacccccatccagcagcaagccattccggccgtgctggcaggtcaggat
gtgctgggcggcgcccagacaggcacaggcaaaacggccggtttcaccctgcccatgttg
caccgtctgctggccaaccatggccgtggcggccgtcgtcaggtacgcgccctggtgctg
accccgacccgtgaactggccgcccaggtgggcgaaagcatcatcaaatacgcccatcac
ctgccgtttcgcaccctgatcgcctacggcggcgtcagcatcaaacccaacctggacgcc
atcaagctcggcgtcgacatcctggtcgccaccccgggccgcctgctggatctgctgacc
cagcgcgccctcaccctgaccgagctggaagtgctggtgctggatgaggcggatcgcatg
ctggacatgggcttcatcaccgacattcgccgcatcatgaaggcgctgccggaagagcgg
cagaccctgctgttctctgccaccttctccaacgagatcaaggagctggccgacgatctg
ctgaagagcccgaccctgatcgaggtgagcccgagcaacagcacggccgagcaggtcaat
cagcgcatcatcaaggtcgaccgcgagcgcaagcgcgagctgctctcccacatgatcggc
cgcaataactggcaacgggtgctggtgttcgtgcgcaccaagcagatcgccgaccgcctc
gcccaccagatggaaaaagacggcctcaataccgtcgccatccacggtgacaagagccaa
ggtgcccgcaaccgggcgctggcggattttcgggaaggcaaggtacgggtgctggtcgcc
accgacatcgccgcccgtggtctcgatatcgatcaactgccccatgtgatcaacttcgag
ctgccccaggtggccgaggattatatccaccgcatcggccgtaccggccgtgccggtcgt
ggaggcgaagccatctccctggtcagccaggatgaacaggatcagctcaaggccatcgag
tccctgatcggcctcagcataccgagcgagatcctggccggttatgagccgagcggcaaa
ccgactcgccagaccctgccgggcagcaagccggtacaaaacccgccgcgggatcgtggc
catgccaacgccaagcataatgccaaggcgcccgccaagggcaaaggcaagccgggagcc
ggcaagcccaaagccgatggcagcaagcaaccggcgccggcgcgccagaaggatcgcggt
ggcgtggacgcagggctcacccctatgcgccgcctgccccgggcccagcgcgacagctat
caggacaactccaacgaggagtaa
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