Aeromonas sp. CA23: CK910_16965
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Entry
CK910_16965 CDS
T10911
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aero Aeromonas sp. CA23
Brite
KEGG Orthology (KO) [BR:
aero00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aero03019
]
CK910_16965
Enzymes [BR:
aero01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CK910_16965
Messenger RNA biogenesis [BR:
aero03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CK910_16965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
ResIII
AAA_23
AAA_22
PhoH
AAA_30
NTPase_1
NACHT
TsaE
T2SSE
AAA_11
WHD_HA2
nSTAND_NTPase5
SLFN-g3_helicase
AAA_25
ABC_tran
DUF6145
Motif
Other DBs
NCBI-ProteinID:
ATL99970
LinkDB
All DBs
Position
complement(3646811..3650740)
Genome browser
AA seq
1309 aa
AA seq
DB search
MSLSIEALRRRLPACMNLDARRLSSRLHGAKKLPEGKQAAVLETIAADLDAAQARYQSRL
AGVPKVTYPDNLPVSQKQAEIAKAIEEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARISEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLTSDKSEGLEERDELQGIFDAVEELAREGLGDILIFMNGEREI
RDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQQHAGRRIVLATNVAETSLTVPGIRYV
IDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFNGRPAF
TDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLSLLKELEAVRELPARHV
AAQQAGQEQDLEPKLQLTDTGRQLSRIPLDPRLAKMVITAAQTGCLSEVMVITAGLSIQD
PRERPMEKKQAADEQHRRFEDKDSDFLAFVNLWNYLKEQQDALGSNPFRRMCQKEFLSYL
RVREWQDIHFQLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARN
GRFHLFPASGLFKKPPKWVMAAELVETSRLYARVNAKIEPEWVEPLAAHLIKLHHSDPHW
SKKSGAVMAKEKVTLYGLTLVNERTINFSRLDPALCRELFIRRALVEGDFETRHRFFGEN
RKLLAEVEALEHKSRRRDILVDDEDLFRFYDARLPEDVISARHFDKWWKEAQKQDPEQLN
FEKEMLMKGDAAHISDFDYPNFWQQGRLKLKLSYQFEPGEAADGVTLHIPLPLLNQVEVK
GFEWLIPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLASLNPEQGPLLDEMERQLRR
MTGVSVPRESWDWASVPDHLKLTFRVVDDKQKKVAEGKDLEALKESLRGKVQETLSQVAD
DDIEQSGLTLWSFGELPQEYSQKRGGFEVKAYPALVDEKDSVSIQLVESPVAQQQLMWAG
QRRLVLLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIERHGGLAW
DEAGFEALKEFVRAELNDAVVEVASQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQLQL
GNLIHKGFVTETGWQRLPDLLRYLRAIERRMEKLAIDPNRDRVYMLKVQSVEADYKALLA
KIPKSQLIPAEVANIRWMIEELRVSFFAQNLGTPYPVSDKRVLNAIAQC
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctccctgcctgcatgaatctcgacgcc
cgccgtctctccagccgtctgcacggagccaagaagctgcccgagggcaaacaggctgcc
gtactcgagaccatcgccgccgatctggatgcggcacaggcgcgctaccaatcccgtttg
gcgggcgtacccaaggtgacctatccggacaacctgccggtcagccagaagcaggcggag
atcgccaaagccattgaagagcaccaagtggtgatcatcgccggtgaaaccggctcgggc
aaaaccacccagatccccaagatttgtctggcgctcgggcgcggggtgaagggcttcatc
ggccacacccagccgcgtcgtctggcggcccgcaccgtggcggctcgcatttccgaagag
atggagtccgagctcggtcactacgtgggctacaaggtgcgctttaccgatcaggtgagc
gaacagacccacatcaagctgatgaccgacggtatcctgctggcggagatccagaacgac
cggatgcttacccagtacgacaccatcatcatcgatgaggcccacgagcgcagcctcaac
atcgacttcattctgggctatctcaagcagctgttgccaaggcgccccgatctcaaggtg
atcatcacctcggccaccatagacccgcaacgcttctcccgccatttcaacaaggcgccg
gtgatcgaggtctctggccgcacctacccggtggaggtgcgctaccgtccgctcaccagt
gataaaagtgaagggctggaagagcgcgacgagctgcaggggatcttcgatgcggtggaa
gagctggcccgcgaagggctgggggatatcctcatcttcatgaatggcgagcgggagatc
cgcgataccgccgatgccctgcgcaagctcaacctgcgcgacaccgaggtgctgccgctc
tacgcccgcctctccaacgccgagcagaacaaagtgttccagcaacacgccggacgacgc
atagtgctggctaccaacgtggcggagacctcgctgacggtgccgggcattcgctacgtg
atcgatccgggtaccgcccgcatcagtcgctactcctggcgcaccaaggtgcagcgcctg
cctatcgagccagtctcccaggccagtgccaaccagcgcaaggggcgttgcggccgggtg
gcggacggtatctgtatccgcctctactcggaagaggatttcaacggccgtccggccttt
accgatccggagatcctgcgcaccaacctggcctctgtcatcttgcagatgctggcgctc
ggccttggcaacatggaggccttccccttcgtcgagccgccggaatcgcgccacatcaag
gatggcctgagcctgctcaaggagctggaggcggtgcgcgaactgcctgctcgtcacgtc
gctgcccagcaagccggccaggagcaggatctcgaacccaagttgcagctgaccgacaca
ggtcgccagctgtcgcgcattccccttgatccacgtttggctaagatggtgatcacggcg
gcgcaaaccggctgcctgagcgaggtcatggtgatcaccgccggcctcagcatccaggat
ccccgcgagcggcccatggagaagaagcaggccgccgacgagcagcacagacggtttgaa
gacaaggattcggacttcctcgccttcgtcaatctgtggaactacctgaaggagcagcag
gatgcgctcggcagcaacccgttccgccgcatgtgccagaaggagtttctctcctacctg
cgggtgcgcgagtggcaggatatccacttccagctgcgccagacggtgaaggagctgggc
ttcaaggccaaccatgaaccggcggatttcaagacggtgcactgcgccctgctgaccggc
ctcctgagccatattggcaacaaggatctggagaaacccgagtttctcggcgcccgcaac
ggccgcttccacctgttcccggcttcgggcctgttcaagaagccgcccaagtgggtgatg
gccgccgaactggtggagacctcgcgcctctacgcccgggtcaacgccaagattgagccg
gaatgggtggagccgctggcggcgcacctcatcaagctgcaccacagcgacccacactgg
tcgaagaaaagtggcgccgtcatggccaaggagaaggtgaccctctatggcctgaccctg
gtcaacgagcgcaccatcaacttcagccgcctcgatccggccctgtgtcgcgagctgttt
attcgccgcgccctggtggagggggatttcgagacccgtcaccgcttctttggcgagaac
cgcaaactgctcgccgaggtggaggcgctggagcacaagtcgcggcgccgcgacatcctg
gtggacgacgaggacttgttccgcttctacgatgcccgcttgccggaagacgtcatctcc
gcccgccacttcgacaagtggtggaaggaggcgcaaaagcaggaccccgagcagctcaac
ttcgaaaaagagatgctgatgaagggggatgctgcccacatcagcgatttcgactacccc
aacttctggcagcaggggcgactcaagctcaagttgagctaccagttcgaaccgggggag
gcggcggacggcgtcaccctgcacattccgttgccgctgctcaatcaggtggaggtgaaa
gggttcgagtggctgatccccgggctgcgccatgagctgctggtggccctcatcaagtcg
atgccaaagccgatgcgcaagaatttcgtgccggctcccaactacgccgatgcgctgctc
gccagcctcaacccagagcaggggccgctgctggacgagatggagcgccagctgcgccgc
atgacaggcgtctccgtgccccgcgaatcctgggattgggcatctgtgcccgatcacctg
aaactcaccttccgggtggtggacgacaagcagaagaaagtggcggaagggaaagacctg
gaagcgctgaaggaatccctgcgcggcaaggtgcaggagacgctctcccaggtggcggac
gatgacatagagcagtccggccttaccctgtggagtttcggcgagctgccccaggagtac
agccagaagcgcggcggcttcgaggtgaaggcctatccggcgctggtggatgagaaggac
tctgtctccatccagctggtggagagcccggtggcccagcagcagctgatgtgggcgggc
cagcgccggctggtgctgctcaacgtgccatcccccatcaagtacctgcaggagaagctg
cccaacaaggccaagctgggtctttacttcaacccctttggcaaggtggctgagctgatc
gatgactgcatcgcctgcggctgcgacaagctcatcgagcgccacggcggcctggcctgg
gacgaggcggggttcgaggcactcaaggagttcgtgcgcgccgagctcaacgatgccgtg
gtggaagtggccagccaggtggaagccgtgctgaccctgtctcacgagatcaagaagcgg
ctcaagggcaagatgcagctcgataccgcctttgccatgtccgatatccagttgcagctg
ggcaacctcattcacaagggcttcgtcaccgagaccggctggcagcggctgccggacttg
ctgcgctacctgcgcgccatcgagcgcaggatggagaagctggccatcgatcccaaccgg
gatcgggtctatatgctcaaggtgcagagcgtggaggccgattacaaggcactgctcgcc
aagatccccaaatcccagctgatcccggccgaggtggccaatatccgctggatgatagag
gagctgagggtctccttcttcgcccagaatctggggaccccctatccggtgtcagataaa
cgggtgcttaacgccatcgcccagtgctaa
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