Aeromonas sp. 1805: E5E96_05930
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Entry
E5E96_05930 CDS
T10912
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aerz Aeromonas sp. 1805
Pathway
aerz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aerz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5E96_05930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aerz03021
]
E5E96_05930 (rpoC)
03400 DNA repair and recombination proteins [BR:
aerz03400
]
E5E96_05930 (rpoC)
Enzymes [BR:
aerz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5E96_05930 (rpoC)
Transcription machinery [BR:
aerz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5E96_05930 (rpoC)
DNA repair and recombination proteins [BR:
aerz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5E96_05930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QJT16861
LinkDB
All DBs
Position
complement(1229467..1233771)
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVRTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLSGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLRAHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDEMGRTKE
SHKLPYGSVLEVKDGQAVNAGETVANWDPHTHPIITEVAGRLHFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHGRINQRAAAARAVGVPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgtgag
cgtatgggccacatcgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgatatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacccggcatgaccaacctcgagcgcagccagatgctg
tccgaagagcagtacctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatcctggcattgctgcgcgccatcgatctggaaggcgaagtgcgcacc
atgcgcgaagagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgc
ctgaagctgatggaagccttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcccgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgcttgaag
cgcctgctggatctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtcgatgccctgctggacaacggccgtcgtggtcgtgccatcactggctccaac
aagcgcccgctgaaatccttggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactactccggtcgttccgttatcaccgtaggtccgacg
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctggagctgttcaagccgttc
atctatggcaagctggaatcccgcggtctggcgaccaccatcaaggccgccaagaagatg
gtggagcgcgaagaggctgtcgtttgggacatcctggacgaagtgatccgcgaacacccg
gttctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgtttgaaccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccgtctcaggacgtggtcttgggtctgtactacatgacccgcgcccgtatcaacgcc
aagggcgaaggtatggtgctgtccggcccgaaagaagccgagaaggtataccgcgccggt
ctggccgatctgcatgctcgcgtgaaagttcgcatcaccgaatacctgcgtcaggaagac
ggttcgctgcgtgctcacaccgagatgaagaacaccaccgttggtcgtgcgatcctgagt
ctgatcctgccgaaaggcatggaatacgcgctgatcgacgagccgaaggtgctgactgct
gcagagcaggctgacctggatgccaacccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgtcatcttcgctgaccagctgatgtataccggtttccactatgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatt
gccgcagccgaagccgaagttgccgagatccaggaccagttcctgtccggtctggtgacc
gcgggcgaacgctacaacaaggttatcgatatctgggccagcgccaacgagcgcgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaagcctcgttcaacagcatcttcatgatggccgactctggtgcgcggggttccgca
gcccagatccgtcagctggccggtatgcgtggcctgatggccaagccggatggctccatc
atcgagaccccgatcgtcgcgaacttccgcgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagactgcgaactccggt
tacctgactcgtcgtctggttgacgtggcacaggacatggtgatcaccgaggacgattgc
ggcactaccgagggtctgtggatgactccgctgatcgaaggtggcgacgtggtcgaaccg
ctgcgtgagcgcgtgctgggccgtgtggttgccgatgatgtgatcaagccgggtactgaa
gacgaagtgctggtagcacgcaacaccctgctcgacgagcagctgtgtgacctgctggag
cgcaactctgttgaccgcgtgaaggttcgttctgccatcacctgtgagaccgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggtcacctggttaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgaaccgggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgtgccgctgccgagagcagcatccaggtcaag
aacaccggtagcatcaagctgcagaatgccaagttcgttcacaacagtgacgacaaactg
gttatcacctcccgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttacggttccgtgctggaagtgaaagatggccaggccgtgaacgcc
ggtgaaaccgtcgccaactgggatccgcacactcacccgatcatcaccgaagtagcgggt
cgcctgcacttcgaacacatgatcgatggcgtgactattactcgtcagaccgacgagctg
accggtctctcctccatcgtcgtgctggatgtcaacgagcgtccgagcgccggtaaagag
atgcgtccgaccgtgaaactggtcgacctgaacggcaaggacgtgatgatcccgggtacc
gatgtagccgcccagtacttcctgccgggcaaggcgatcgtgaacctggaagatggtgcc
aacgtgggcgtgggtgacgcggtagcgcgtatcccgcaagagtccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gcaattctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgt
cgtctggtcatcaccccgaccgatggaggcgatgtctacgaggagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgacattctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtgcaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgtgcgtcagatgctgcgcaagtgcgagatcctgagcgctggcgacaccgac
ctgatcgaaggcgaacaggttgaagtggctcgcgtgaagattgccaaccgtaagctggtt
gctgagggcaagaccccggccaccttccgtcacatcctgatgggtattaccaaggcatct
ctgagcaccgagtccttcatctctgcggcttccttccaggaaaccacccgtgttctgacc
gaagcggccgttggcggcaagcgtgacgaactgcgtggcctgaaagagaacgtgatcgtg
ggtcgtctgatcccggctggtaccggctttgcctaccaccacggccggatcaaccagcgt
gccgccgcagcccgtgctgttggcgtaccgcaggtgactgccgatgaagctcagcaaaac
ctggcggatctgctcaacgcagccggcagttttgacgaagagtaa
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integrated database retrieval system
