Aeromonas sp. 1805: E5E96_11435
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Entry
E5E96_11435 CDS
T10912
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aerz Aeromonas sp. 1805
Brite
KEGG Orthology (KO) [BR:
aerz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aerz03009
]
E5E96_11435 (rlmD)
Enzymes [BR:
aerz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E5E96_11435 (rlmD)
Ribosome biogenesis [BR:
aerz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E5E96_11435 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
Methyltransf_12
PCMT
Methyltransf_23
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_4
PrmA
Motif
Other DBs
NCBI-ProteinID:
QJT17840
LinkDB
All DBs
Position
2385991..2387313
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AA seq
440 aa
AA seq
DB search
MAQFFKPQKKSTQPQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGEQVKARILEDKKQ
YAHAALQQVVTPAANRIAPFCSHYRECGGCSAQHLAEADQRAAKEAGLVSLFERLGNIQP
PALEPVLGGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQSNDLVEIGGCPVLAEPLSVLI
SPLRECLNRLKSQRELGHAELIQAEQGILMLLRHTGRPTEADRAQLIEFAKTQGIDLYLQ
AADEQIEPLHQQCAPSYSLDGLSLAFAPGDFIQVNAPVNQRMVEQALSWLEAGKDDKVLD
LFCGIGNFTLPLARQAREVVGVEGELAMVARAEENARRNGINNARFYKADLSGDIAGMSW
AREGFDLVLLDPARPGAFEVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLG
MLDMFPHTGHLESMALFERK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcccagtttttcaagccccaaaagaaatccacccagccccaacgcattgaatttacg
gtagacagcctggatcaccactgcgtcgggatcggccgccaccagggcaaggcgatcttc
atcgaaggggcgctgcccggtgagcaggtcaaggcccgcatcctcgaagacaagaagcag
tatgcccacgccgccctacaacaggtggtgaccccggcggccaatcgcatcgcccccttc
tgcagccactaccgcgagtgcggcggctgcagtgcccagcacctggctgaagcggatcaa
cgcgccgccaaggaggccggtttggtcagcctgttcgagcggctcggcaacatccagcct
ccggcgctcgaacccgtgctgggtggagagtcccgcgcttatcgtcgggtctgccggctg
gccatcaagttcgacaagaacggccgctgcacccgggtgggctttcgtcgtcgccagtcg
aacgatctggtggagatcggcggttgcccggtgctggccgagccgctctccgtgctgatc
agcccgctgcgcgagtgtctcaaccgtctcaagagccagcgcgagctgggccatgcggag
cttatccaggccgagcaagggatcctgatgctgctgcgccataccggtcggccgaccgag
gcggatcgggcgcaactgatcgagtttgccaagacacaggggatcgacctctatctgcag
gcggccgacgagcagattgagccgctgcaccagcagtgtgccccctcctactcgctggat
ggcctgtctcttgcattcgctcctggtgacttcattcaggtcaacgcgccggtcaaccag
cgcatggtggagcaggcgctctcctggctggaggcgggcaaggatgacaaggtgctcgat
ctgttctgcggcatcggcaacttcaccctgccgctggcccgtcaggctcgcgaagtggtg
ggggtagaaggggagctggccatggtggcgcgcgccgaagagaacgcccgtcgcaacggc
atcaacaatgcccgtttttacaaggcggacttgagcggcgacatcgccggcatgtcctgg
gcccgggaaggcttcgatctggtgttgctggatccggcccgtcccggagcgttcgaggtg
atggagcacgtcgtgaaactttcacccagacgggtggtctacgtttcctgtaatccggtc
accctggcgcgcgacagccaggtgctggtgaaagggggttaccggctggtgcgcctcggc
atgctcgacatgttcccccacaccggccatctggagtccatggcgctgttcgagcgcaag
taa
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