Aeromonas sp. 1805: E5E96_17880
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Entry
E5E96_17880 CDS
T10912
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aerz Aeromonas sp. 1805
Pathway
aerz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aerz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5E96_17880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aerz03019
]
E5E96_17880
Enzymes [BR:
aerz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E5E96_17880
Messenger RNA biogenesis [BR:
aerz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E5E96_17880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
Helicase_C_2
Cas3-like_C_2
PRAI
Motif
Other DBs
NCBI-ProteinID:
QJT18979
LinkDB
All DBs
Position
complement(3773061..3774446)
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AA seq
461 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML
QRLLANHGRGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAI
KLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAERQ
TLLFSATFSNEIKALADDLLSDPTLIEVDPSNTAAEQVTQRIIQVDRERRRELLSHMIGR
GNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVLVAT
DIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKGIEA
LIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRVRGAANAKGGNGKSAAGKSKAKSD
GGKKPAPARKREVVGEDIGFTPMRRLPKAQRDDYQDNSNEE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaacgaactgggtctgtctccgcacatcctgcgggccgtcaaggagctgggt
tacgaacagccaacccccatccagcaacaagccattcccgccattctggccggacaggat
gtgctcggcggcgcccagacaggcacaggcaaaacggccggtttcaccctgcccatgctg
cagcgcctgctggccaaccatggccgtggccgccgtcaagtgcgggccctggtgctgacc
ccgacccgcgaactggctgcccaggtgggtgagagcatcatcaaatatgcccaccacctg
ccgtttcgcaccctgatcgcctacggcggcgtcagcatcaagcccaatctggacgccatc
aagctcggcatcgacatcctggtggccaccccgggccgtctgctggatctgctgacccag
ggggcgctgaccctgtccgagctggaagtgctggtgctggacgaagcggatcgcatgctc
gacatgggcttcatcgtcgacattcgccgcatcatgaaggcgctgccggccgaacggcag
accctgctgttctccgccaccttctcaaacgagatcaaggcgctggcggatgacctgctg
agcgaccccaccctgatcgaggtggatcccagcaacaccgccgccgagcaggtgacccag
cgcatcattcaggtcgaccgggaacgtcgccgcgagctgctctcccacatgatcggccgc
ggcaactggcagcgggtgctggtgttcgtgcgcaccaagcagattgccgatcgcctggcc
cagcagatgcaaaaagacgggctcgataccgtcgccatccacggcgacaagagccagggt
gcccgcaaccgggcgctggcagattttcgggaaggcaaggtgcgggtgctggtggcgacc
gacatcgccgctcgcggcctcgacatcgatcagctgccccacgtgatcaacttcgagctg
ccccagatggcggaggattacatccaccgcatcggccgcaccggccgcgccggtcgtggc
ggcgaggccatctcgctggtgagccaggacgagctgggccagctcaaggggatagaggcg
ctgatcggccaatccctctcggtggagatcctggaagggtatgagcccagcggcaaaccg
agccggcagaccctgccgggcagcaagccggtacaaaacccgccgcgggtccgtggcgcc
gccaatgccaagggcggcaacggcaaatccgccgcaggcaagagcaaggcaaagagcgat
ggcggcaagaagccagccccagcccgcaagcgggaagtggtgggcgaggatatcggcttt
acccccatgcgccgcctgcccaaggcccagcgcgacgactatcaggacaactccaacgag
gagtaa
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