Aeromonas sp. ASNIH5: C2U30_02995
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Entry
C2U30_02995 CDS
T05873
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aes
Aeromonas sp. ASNIH5
Pathway
aes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U30_02995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aes03019
]
C2U30_02995
03009 Ribosome biogenesis [BR:
aes03009
]
C2U30_02995
Enzymes [BR:
aes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2U30_02995
Messenger RNA biogenesis [BR:
aes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2U30_02995
Ribosome biogenesis [BR:
aes03009
]
Prokaryotic type
rRNA processing factors
C2U30_02995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AUT40764
LinkDB
All DBs
Position
667918..671064
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQQRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRTSIANLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPRQAQVVEREQPLLQGFAPAPQPVAPAAPA
PVATPAPVAEQVGFFGKLAKAFSGLFGTSSDATPAEVKAPADKPAAQREARKDDGHRHQR
DESRSRGQRGRRDDNRGSRNAEAGEKREGAASRESSDRSRRPRKEREPRQEREPRQEREP
RGEVRTEQRMEREPREPRQEREPRAPRPAREPRAPREPRAEVIVEAVDTVDTAVASAEPR
QEKEQKVAERRERRQLRKQIRVDVAATDTPALPTDEHVVTDVADVQAAAEQQEEQGEGQR
RSRRTPRNQRIEGQRRKRINEEARGQREDEAQGEVQLTTAAQADAAQVKVEEPAVPVITI
PSAEAVAAALQASAALTEHVVAEAVAEEAAEQALAAQAVDAPSTDEVEQAAQADAEPVAE
VAVVEPEMVEPIVDTASHDEPVAVIDAVEQTQQVEAIPEEVAPVAEAAPVVIAEETATAE
AEVVEMPAAVVQTEPATSPEVKVSKGAGVLARARKAYAPMATPAAAPAPTPREPVEYAPL
VRSEVVTSGRHGGSTAASNVATSPAGRP
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgagtagaacccagtctcgaagctgcttttgttgactat
ggcgccgaacgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtc
attgtccagatcgacaaggaagagcgtggtaccaagggtgcagccctcaccaccttcatc
agtctggctggcagctacctggtgctgatgccgaacaaccctcgtgccggcggcatctcc
cgtcgcatcgagggtgacgagcggaccgagctgaaggaagccctgagcggactgaccgtg
ccggacggcatgggcctcatcgtgcgcaccgccggtgtgggcaagtccccggaagagctg
gagtgggatctgaacgttctgctcaatcactgggactccatccacaaggcgtcacaacaa
cgttccgctccggtgctcattcaccaggagagcaacgtcatcgtgcgcgccatccgtgat
tatctgcgtcgcgatgtgggcgagatcctgatcgacaacccggtcatcttcgagcgcgcc
aagtcgcatatcgagctggtccgtcccgattttctcaatcgcgtgaagctgtacaagggc
gatgtcgccctgttcaaccacttccagatcgagagccagatcgaatcggccttccagcgc
gaagtgcgcctgccctccggcggcagcatcgtcatcgatccgaccgaagcactgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagaccgccctgcag
accaacctggaagcagcagacgagattgcccgtcaattgcgtctgcgtgacctgggtggc
ctgattgtcatcgacttcatcgacatgaccccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggatcgtgcccgtatccagctgggccgtatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgcccccgttgccagggtcagggggtcatccgtgacaacgaatccctcgccctg
tccatccttcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcatgcc
caggtgccggtcgatgtggccgcctatctgctcaacgagaagcgtacctccatcgccaat
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctc
aaaaccgagattgccaagccggtctatcagccgcgccaggctcaggtagtcgagcgcgaa
cagccgctgctgcaagggtttgccccggctccccagccggttgcgcccgccgccccggct
cctgttgcgactcccgctccggttgcagaacaagtcggcttctttggcaagctggccaag
gccttctccggcctgttcggtacctcctccgatgcgactccggccgaagtgaaggcgcct
gccgacaaaccggccgcccagcgcgaagctcgcaaggatgacgggcaccgtcaccagcgc
gatgaatcccgcagccgtggtcaacgtggccgtcgcgatgacaaccgcggcagtcgcaat
gccgaggccggcgagaagcgtgaaggcgcagccagccgcgagagcagtgatcgcagtcgt
cgcccgcgcaaagagcgtgagcctcgtcaagagcgggaaccgcgccaggaacgggaaccc
cgtggcgaagtgcgcaccgaacagcgcatggagcgtgagcctcgcgaaccccgccaggag
cgcgaacctcgtgccccgcgtccggctcgtgaacctcgcgccccccgcgaaccccgtgcc
gaggtgatcgtcgaggcggttgataccgttgatactgcggtcgccagcgctgaaccgcgt
caggagaaagagcagaaagtggctgagcgccgcgaacgtcgccaactgcgcaagcagatc
cgtgtcgatgtcgccgcaaccgacacccctgccctgccgactgacgaacacgtcgtcacc
gatgtcgccgacgtgcaagccgctgctgagcagcaagaagagcaaggcgaaggtcagcgt
cgttcccgccgtaccccgcgcaatcagcgtatcgaagggcaacgtcgcaagcgtatcaac
gaagaggctcgtggccagcgtgaagacgaagcacaaggcgaagtgcagctgactaccgcg
gcccaggccgatgcggctcaggtgaaggtggaagaaccggctgtgcctgtcatcaccatt
ccgagcgcagaagcggttgctgccgccctgcaggcctccgccgcactgaccgaacacgtg
gtggctgaagccgttgctgaggaagcggcagagcaagcactggcagcccaggcagtggac
gcgccctccactgacgaagttgaacaggctgcgcaagcagacgctgaacccgtcgccgaa
gtggcagttgtcgaacccgagatggtcgaacctatcgtcgacaccgcctctcatgacgaa
cctgtcgccgtgatcgacgctgtcgagcagacccagcaagtggaggccatcccagaagag
gttgcaccggttgctgaagcggcacctgtcgtgatcgctgaggagactgccaccgccgag
gcggaggtcgtcgagatgccggctgccgtggtgcaaaccgagccagcaaccagccccgaa
gtgaaggtcagcaagggtgccggtgtattggcccgtgcccgcaaggcttatgcccccatg
gcaacgccggctgcagctcctgccccgacaccccgtgaacccgtggagtacgctcccctg
gtacgcagtgaagtcgtgacctccggtcgccacggtggcagcaccgctgccagcaacgtg
gcaaccagcccggccggtcgcccctga
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