Aeromonas sp. ASNIH5: C2U30_08225
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Entry
C2U30_08225 CDS
T05873
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
aes
Aeromonas sp. ASNIH5
Pathway
aes03030
DNA replication
aes03430
Mismatch repair
aes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U30_08225 (holA)
03430 Mismatch repair
C2U30_08225 (holA)
03440 Homologous recombination
C2U30_08225 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aes03032
]
C2U30_08225 (holA)
03400 DNA repair and recombination proteins [BR:
aes03400
]
C2U30_08225 (holA)
Enzymes [BR:
aes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C2U30_08225 (holA)
DNA replication proteins [BR:
aes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C2U30_08225 (holA)
DNA repair and recombination proteins [BR:
aes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C2U30_08225 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
AUT41703
LinkDB
All DBs
Position
1818299..1819333
Genome browser
AA seq
344 aa
AA seq
DB search
MRIYPEQLADHLKAGLKPCYLIFGDEPLLKLEAIDAVRQVARKQGFDERHSFVVEQGLDW
NQVYDACQAMSLFSARQIIELELPAKIDKDLAARISDIGKQLHPDLLLVLSGPRLNQTQM
KASWFDKLSQSGTYVPVNHPEPRFFPRWMSARFQRFGLKALPDAVNFMCHAYEGNLLAAS
QEIEKLTLLSPPQPISVAYLQETIIRHAHFTPFQLVDTLLEGKVNRAQRILLALRAEGTE
PGMLAWTLCRELEQLTELALAARAGQPLVEHFSRLRIWQSRQQLIQQALTRLPFPKIRQL
WQLMAQLDHAQRHFDTEQAWLMLQTIALGFRDGTPLPLLETESC
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcggatttaccctgaacaactcgcggatcatctcaaggcagggctcaagccctgctat
ctcatttttggggacgagcccctgctcaagctggaagccatcgacgccgtgcgtcaggtg
gcacgcaaacagggcttcgatgaacgccacagcttcgtggtggaacaggggctggactgg
aaccaggtctacgatgcctgccaggccatgagcctgttctcggcccgccagatcatcgag
ctggagctgcccgcaaagatcgacaaggatctcgccgcccgcatcagcgacattggcaag
cagctccaccccgacctgctgctggtgctctcgggcccccgcctcaaccagacccagatg
aaggcgtcctggttcgacaagctgagccagagcggcacctatgtaccggtcaaccacccc
gagccccgtttcttcccgcgctggatgagcgcccgctttcagcgcttcggcctcaaggca
ctgccggatgcggtcaatttcatgtgccacgcctacgagggcaacctgctggccgccagc
caggagatagagaagctgaccctgctctcgccgccccagcccatcagcgtcgcctatctg
caggagaccatcatccgccacgcccacttcactcccttccagctcgtcgataccctgctg
gaaggaaaagtgaaccgggcccagcgcatcctgctggccctgcgcgccgagggcaccgaa
cccggcatgctggcctggaccctgtgccgcgagctggagcagctcaccgagctggcgctg
gccgcccgcgccggacagcccctggtggagcatttcagccgcctgcgcatctggcagagt
cgccagcaactcatccagcaggcgctgacccggcttcccttccccaagatccgacagctc
tggcaactgatggctcagctggaccatgcccagcgccatttcgacaccgagcaggcctgg
ctgatgctgcaaaccatcgccctcggctttcgtgacggaaccccgctccccctgctggag
acggaatcatgctga
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