Aeromonas sp. ASNIH5: C2U30_08320
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Entry
C2U30_08320 CDS
T05873
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aes
Aeromonas sp. ASNIH5
Pathway
aes03410
Base excision repair
aes03430
Mismatch repair
aes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C2U30_08320
03430 Mismatch repair
C2U30_08320
03440 Homologous recombination
C2U30_08320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aes03400
]
C2U30_08320
DNA repair and recombination proteins [BR:
aes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C2U30_08320
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C2U30_08320
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U30_08320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
bHLH_IRO3
Motif
Other DBs
NCBI-ProteinID:
AUT41721
LinkDB
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Position
complement(1835140..1836870)
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AA seq
576 aa
AA seq
DB search
MPLQIRRRPRVDDSHLPATLHPLLRQIFASRGVEDPALLERSANQLLPPQRLFGMAQAVP
LLAEALTAQKRILIVGDFDCDGATSSALCVLALRAMGGHHIDFLVPNRFEFGYGLTPEIV
ELAVARGAEFLITVDNGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGC
DFPSKSLAGVGVAFYLMAALNTHLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDG
NNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSL
GVACLLCDDINLARQFASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHR
NEWHQGVVGLVASKVKEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGL
MGKFGGHAMAAGLTLPKANIEAFGRAFEVVIGELVTPELLTGVLLTDGELLPDELSLELA
ELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWP
DASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcaaatccgtcgtcgtccgcgagttgatgattcccatctgcccgccaccctg
cacccgctgcttcgccagatcttcgccagccgcggggtagaagaccctgccctgctggag
cgcagcgccaaccagctgctgccgccccaacgtctgttcggcatggcacaggcggtgccg
ctgctggccgaggcgctgacggcgcaaaaacgcattctcatcgtcggtgactttgactgc
gatggcgccaccagctcggcgctgtgcgtgctggccttgcgcgccatgggggggcaccac
atcgattttctggtgcccaaccgcttcgagttcggctatggcctcaccccggagatcgtc
gagctggcggtggcccgcggcgccgagttcctgatcacggtggacaacggcatctccagc
atcgccggggtggcggcggccaaggcggccggcatgcaggtactggttaccgatcaccat
ttgccgggtcaggagctgcctgacgccgacgcgatagtgaaccccaaccagcatggctgc
gacttcccctccaagtccctggccggggtcggggtcgccttctatctgatggcggccctc
aacacccatctgcgccagagcggctggtatgagcgccaggggctgcgcgcccccaacgtg
gcggattacctcgatctggtggccctcggcaccgtggccgacgtggtggcgctggatggc
aacaaccgcatcctggttcatcaggggttgcagcggatccgggccggccgttgtcgcccc
ggcatccaggcgttggtggacgtgtcgggccgcgacgggcgtcgcctgtgcgctgccgat
ctcggctttgcgctggggccgcgcctcaacgcggtgggccggctcgatgacatgtcactc
ggggtcgcctgtctgctctgtgacgacatcaacctggcgcgccagttcgcctccgaaatg
gacagcctcaaccaggagcgcaaggagatcgagcaggggatgcagcaggaggcgctcgcc
actttggagcagatccgttttcgtgacggcgaggtgccctccggcatcgtgctgcaccga
aacgagtggcatcagggggtggtggggctggtggcctccaaggtgaaggagaagtactac
cgcccggtcattgcgtttgccgagagcagcgagaccgagctcaagggctccgggcgctcc
atccctggggtgcacctgcgcgatgcgctggagctgctcgacacccgccaccccggcttg
atgggcaagtttggcggccacgccatggcggccgggctgaccctgcccaaggccaatatc
gaggccttcggtcgggccttcgaggtggtcatcggcgagctggtgacccctgagctcttg
accggggtgctgctcaccgatggcgagctgttgcccgatgagctgagtctggagctggca
gagcttattcgcgcctccggcccctggggtcaggccttccccgagccgctgtttgacggg
gaattcgtgctggtgcagcagcggctggtgggggagaagcacctcaagatgatgctgacc
acggattccggccacgccgtggatgccatcgcctttggcgtcgacttgcaacgctggccc
gatgcctcggtgaagcgggtgcggctggtctaccggctcgacgtcaacgagtggcgtggc
aaccgcagcgtgcagttgctggtggagcatctggaagccgccggtctctga
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