Aestuariibaculum sp. YM273: RBH94_02240
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Entry
RBH94_02240 CDS
T09314
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH94_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aest03019
]
RBH94_02240
Enzymes [BR:
aest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBH94_02240
Messenger RNA biogenesis [BR:
aest03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBH94_02240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
P-loop_SecA
AAA_19
UvrD-helicase
AAA_22
DUF4687
CMS1
Motif
Other DBs
NCBI-ProteinID:
WMI65987
LinkDB
All DBs
Position
complement(522495..523772)
Genome browser
AA seq
425 aa
AA seq
DB search
MSFTTLGLSDALLKAISEKGYTTPSPIQQKAIPPILEGHDVLASAQTGTGKTAGFTLPLL
HTLSENPKEKYRPIRALILTPTRELAAQVYDNVRAYSAHLNIRSAVIFGGVNQKPQVTTI
RRGVDVLVATPGRLLDLQRQGLVSLKRVEIFVLDEADRMLDMGFLRDIERVISIMPEKRQ
NLMFSATFSPEIKKLAHGILRHPVQVEATPENTTVDAISQKVYRVAKGLKAGLLTKLISD
GKWKQVLVFTRTKHGANKLSEKLKKAGITSAAIHGNKSQGARTKALAGFKNGSVRVLVAT
DIAARGLDIPLLPHVINYELPNVSEDYVHRIGRTGRAGAQGEALSLVSADETTYLRDIEK
LIGLKIPVSIEAGFEPDPNASTKPEKRQQGRRNPGKTKSENSAQKGNTDKSQARGRRTRN
RRSNS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaccaccttaggcttatctgatgccttgctaaaagcaattagcgaaaaagga
tacactactccaagcccgatacaacaaaaagctattccaccaatattagaagggcacgat
gttttggcttcggcacaaaccggaaccggtaaaaccgccggatttaccttacccttatta
cataccttatcggaaaaccctaaggaaaaatatcgccctattcgcgctttgattttaaca
ccaactcgagagcttgctgcgcaggtatacgataatgtgagagcttacagtgcgcattta
aatatacgcagtgctgttatttttggtggtgtaaaccagaaaccacaggtaacaactatt
aggcgaggcgtagatgttttggtggcgacaccggggcgtttattagatttacaacgtcag
ggcttagtgtctttaaagcgcgttgagatttttgtgcttgatgaagccgaccgtatgctg
gatatgggctttttacgtgatatagaacgtgtgattagcatcatgccggagaagcgccag
aacttaatgttttcggcaaccttttcacctgagataaaaaaattggcacatggaatttta
agacatcctgtgcaggtggaggctacacccgagaatacgacagttgatgctattagccaa
aaagtatatcgtgttgccaaaggtttaaaggctgggttattaaccaaactgatttctgat
ggaaaatggaaacaggttttggtgtttaccagaaccaagcacggtgccaataagttaagt
gaaaaattgaaaaaggctggaataacgtctgcagccattcatggtaataaaagtcagggg
gcgcgtactaaagccttggccggatttaaaaacggtagcgttcgtgtattggtagcaacc
gatattgcggctcgtggactggatattccgttattgcctcatgtgattaattacgagtta
ccaaacgtttctgaagattatgtgcaccgaatagggcgtactggtagagccggagcacaa
ggggaagctttatctttggtaagtgccgatgaaacgacctatttaagagatattgaaaag
ctaataggattaaagattccagtttctattgaagcggggtttgagccagacccaaatgca
tcgaccaagccagagaagcgtcagcaaggtagacgtaatcctgggaagacaaagtctgaa
aacagtgcgcaaaagggcaataccgataaaagtcaggcgcgtggcagacgtacccgtaac
agaagaagcaattcttaa
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