Aestuariibaculum sp. YM273: RBH94_04075
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Entry
RBH94_04075 CDS
T09314
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03030
DNA replication
aest03430
Mismatch repair
aest03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBH94_04075 (dnaE)
03430 Mismatch repair
RBH94_04075 (dnaE)
03440 Homologous recombination
RBH94_04075 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aest03032
]
RBH94_04075 (dnaE)
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_04075 (dnaE)
Enzymes [BR:
aest01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBH94_04075 (dnaE)
DNA replication proteins [BR:
aest03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBH94_04075 (dnaE)
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBH94_04075 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
WMI66341
LinkDB
All DBs
Position
complement(978666..983054)
Genome browser
AA seq
1462 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDGMGNCIDQQDYLVQPEGFNIPY
DAEKVHGISTELAQEQGVPLVEVLEKFNAVLGKTKFIVGQNVKFDLNIMGAEFVRGDMAN
VLQELPVLDTCTEHTAELCQIPGGRGGKFKLPTLTELHEFLFKQPFAEAHNATADVEATT
RCFLELIRLEEFTKEELDVEEDYFENFKEANPKEIELIGLKHINLKQESAKIRERIKKAE
GTQISSEEIKQNISDLKEVEFAHLHNHSQFSILQSTISIPALVAEAAKHNMPAVALTDHG
NMMGAFHFVKAVSAHNKSAQAKIAAAQENGEETDVKEIKPIIGCEFFVCEDHLDKTRKDN
GYQVVLLAKNKNGYHNMAKLSSHAFVNGFYYVPRIDKKLIEQYKEDIIVLTGNLYGEVPS
KVLNVGENQAEEALLWWKEQFGDDLYIELMRHNQEDEDRVNAVLVDFAKKHDVKLIATNN
TYYCEKDDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKILFKDIPD
AISNIQEVVDKVEPFELARDVLLPAFGIPDEFKHEEDLVDGGKRGENAYLRHLTYEGAKK
RYGEPLTEEVTERLDFELSVIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVA
YCLWITNIDPMKYDLLFERFLNPDRISMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQII
TYGTMAAKSSIRDTARVLDLPLFDADRIAKLIPNMSKLNKIFGLDEKGLADKFRAEELEK
VNELLNIADGEGLDSETVNLAKVLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLY
VTQFDNSVVEEAGLLKMDFLGLKTLTLIKDTVKIVKAKHDIQLDPENFPLDDEETYALFQ
RGETVGVFQYESPGMQKHLRDLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGDEEIEY
DLPAMEEYLQETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLDKMKPKFI
DQASANGHDAKVLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLS
NNMNDIKQVTFFMEECKRMKLDVLGPDVNESFYKFSVNKDNAVRFGMGAIKGVGHGAVMT
IVENRKKDGHYKSIFDLAKRIDLRAANKKAFENLALAGGFDGFGKTHRAQYFHDEGDGIT
FLEKAIKYGSKHQENENSSQVSLFGEASEVQIEEPQVPPCEEWGTMEKLAKEREVVGIYI
SGHPLDDFKIEMKTFCNANLSFFKTLDPYVNRELVFGGVVTDVQHRVSKQGKGWAMFTVE
DYTDSFEFRIFGEEYLKFRHFLMHNNFVFVKTFVREGWINKDTGKRSEPRLQFNNFQLLH
DVMESYAKKLSIQLEIGDLKESTISRLKELIDMHPGNQALNFVVYDNQEKIKLHMPSRRQ
KVKVCQELISELESEHVKFKLN
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaattttcgatacagaaaccacaggtttaccaaaacgatgggatgcacccatt
accgataccgataattggccacgttgtatacaaattgcatggcagttacacgatggtatg
ggaaattgtatcgatcaacaggattatctggtgcaaccggaaggatttaatattccgtat
gatgccgagaaggttcacgggatttctaccgagttggctcaggagcagggcgtgccctta
gttgaagttcttgaaaagtttaatgccgtgttagggaaaaccaaattcattgtcggacaa
aatgtaaagttcgacttgaatattatgggtgccgagtttgttcgtggtgatatggctaac
gtacttcaggaactccctgtgttagatacttgtaccgagcatactgccgaattatgtcag
atacccggaggtcgtggtggtaaattcaagttgccaacacttaccgagttacacgagttt
ttatttaagcagcctttcgctgaagcccataacgcaactgccgatgttgaggcaacgacg
cgttgttttttggagttaattcgtttagaggagtttacaaaggaagaattagatgtcgag
gaagattacttcgaaaactttaaagaagcaaatccgaaggagattgagcttatcggatta
aagcacattaacctgaaacaggaaagtgctaaaattcgtgagcgcattaaaaaggctgaa
gggactcagatttcttctgaagaaattaaacaaaatatttccgatttaaaggaagttgaa
tttgctcatctgcataatcactcgcagttctccattttacaatccactattagtatccct
gcgttggtggccgaagcggcaaaacacaatatgccggcggtagcgttaaccgatcatggg
aatatgatgggagcatttcactttgttaaagcggtaagtgcacataacaaatcggctcag
gctaaaatagcagcggctcaggaaaatggagaagaaaccgatgtaaaagagataaaacct
attattggttgtgagttttttgtgtgtgaagatcatctagataaaaccagaaaagataat
gggtatcaggtggttttactggctaaaaataagaacggttatcataacatggctaagcta
tcgtctcatgccttcgttaacggtttttactatgtgccacgtattgataaaaaactaata
gagcagtataaagaagatatcatagtgcttaccggaaacttgtatggtgaggtgcctagt
aaggtattaaatgttggtgaaaaccaagcagaggaagcgttgctgtggtggaaagagcag
tttggtgacgatttgtatatcgaattgatgcgtcacaatcaggaagatgaagaccgagtt
aatgcggtgctggttgattttgctaaaaagcatgatgttaaattaattgcgactaataat
acatattactgtgaaaaggacgatgctaatgcgcatgatattttattgtgtgtaaaagat
ggtgaaaaacaggcaacgccaataggtcgtggtcgtgggtatcgttatggtttacctaac
caagaatattactttaagtcttcggaagaaatgaagatcctatttaaggatattccagat
gcgattagtaatattcaagaggttgtcgataaggtagaaccttttgaactggcccgtgat
gttttgcttccagcctttggaattcctgatgaatttaaacatgaagaagatttagttgat
ggcggtaagcgtggtgagaatgcctatttacgtcatttaacttatgaaggtgctaaaaag
cgttacggcgagcctttaactgaagaagttaccgagcgtttggatttcgaattgtcggta
attgaaaatactggatatcccgggtacttcttgattgtagaagactttattcgtgaagcc
cgaaatatggatgtgtcggtagggccggggcgtggttcggcagcagggtcggtggtagcc
tattgcctctggatcaccaatatcgacccgatgaagtacgatctgcttttcgagcgtttc
ttaaatccggatcgtattagtatgcccgatatcgatattgacttcgatgatgaaggtcga
agtcgggttatggattacgtaatcaagaaatacggcgcaaaccaggtggcgcaaattatt
acttatggtaccatggctgcgaagtcgtctattcgtgatacggcgcgtgtactggattta
ccattgtttgatgccgacaggattgcgaagttaattccgaatatgtctaaactgaataaa
atttttggtttagatgaaaaaggactagcagataaattcagagctgaagaattagaaaaa
gtaaacgaacttttaaacatagccgatggtgaagggttggattctgaaaccgtaaacctg
gcaaaagttctggaaggttcggtgcgtaatacaggtattcatgcctgtggtgtgattatc
acgccagacgatattaccaaattcgttcccgtatcagtagctaaagactccgatttatac
gtcactcagtttgataactcggtagtagaagaagccggactacttaaaatggatttcctg
gggttaaaaacattaactctgattaaggataccgttaaaatagtaaaggcaaaacatgat
attcagctcgatccggagaattttccgttagatgatgaagagacttatgcgttgttccaa
aggggagaaacagttggcgtgttccaatacgaatcgcctggaatgcaaaaacaccttcgt
gatttaaagccaacggttttcgaagatcttattgcgatgaatgccttgtaccgaccgggg
ccaatggaatacattccgtctttcgttcgtagaaaacatggcgatgaagagattgagtac
gatttaccagcaatggaagagtaccttcaggaaacttatggtattacggtatatcaagag
caggtaatgttactgtcgcaaaaactggctggatttacgaaaggtgaagccgacgtactg
cgtaaggcgatgggtaaaaagcagattgccgtactggacaagatgaaaccaaagtttatc
gatcaggcgagcgccaatggtcatgatgccaaggttttggaaaaggtttggaaagactgg
gaggcttttgcgagttacgcgttcaataaatcgcactctacgtgttatgcctggattgct
tatcaaacggcgtatttaaaagctcattatcctgcagaatatatggcagcggtattatcg
aataacatgaatgatattaagcaggtgaccttttttatggaagagtgtaagcgcatgaaa
ttggatgttttgggacctgatgtgaacgaatcgttttataaattctcggtaaataaagac
aatgcagtgcgttttggtatgggggcgattaaaggtgttggtcacggtgcggtaatgacg
attgttgaaaacagaaaaaaagacggtcactataaatctattttcgatttagccaaacgt
attgatttaagagcagctaataaaaaggcttttgaaaacttagccttagcaggaggtttt
gatggtttcggaaaaacacatagagcacagtattttcacgatgaaggcgatggaattact
tttttagaaaaagctattaagtacggaagtaagcatcaggaaaatgaaaattcgtctcag
gtaagtttgtttggcgaagcgagtgaagtgcagattgaagaacctcaggtgccaccatgt
gaagagtggggaacgatggaaaaactagctaaagagcgcgaagtggttggtatttatatt
tcggggcatccgttggatgatttcaaaatagagatgaaaaccttttgtaatgccaattta
agtttttttaaaaccttagacccttatgttaatcgagaactggtctttggtggggtagtt
accgatgtgcaacaccgtgtaagtaaacaaggtaaaggttgggctatgtttaccgttgaa
gattataccgatagttttgaattcagaatttttggtgaagaatatcttaaattcagacac
ttcttaatgcataacaattttgtattcgtaaaaacatttgttcgtgaagggtggattaat
aaagataccggtaaacgcagtgaaccacgtttacagtttaataattttcagttgttgcat
gatgttatggagagttatgcaaagaaattatccattcagcttgagataggcgatttaaaa
gaaagcacaatttcaaggttgaaggagctcatcgatatgcatccgggtaatcaggccttg
aattttgtggtttacgataatcaggaaaaaattaaactacacatgccaagccgacgccaa
aaagttaaagtgtgtcaggaattaattagtgaacttgagagtgagcatgttaagtttaaa
ttgaattaa
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