Aestuariibaculum sp. YM273: RBH94_06220
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Entry
RBH94_06220 CDS
T09314
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03410
Base excision repair
aest03430
Mismatch repair
aest03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RBH94_06220 (recJ)
03430 Mismatch repair
RBH94_06220 (recJ)
03440 Homologous recombination
RBH94_06220 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_06220 (recJ)
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RBH94_06220 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RBH94_06220 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBH94_06220 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Ty3_capsid
DSPc
DUF1367
Motif
Other DBs
NCBI-ProteinID:
WMI66757
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All DBs
Position
1444463..1446154
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AA seq
563 aa
AA seq
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MRWTIKAKPETQKLKTLKDALQVDDITATLLLQRGIETFDEAKAFFRPDLNDLHNPYLMK
DMDKAVTRIEEAFANNENILVYGDYDVDGTTSVALMSLYLKTRSDLVATYIPDRYDEGYG
VSFKGIDFASDNDFTLIVALDCGIKAIDKVAYAKEKGIDFIICDHHRPGDIIPEAIAVLD
PKRSDCEYPYKELCGCGVGFKLIQALAEREGKTIKDLVGYLDLVATAIGADIVPITGENR
ILAFYGLRVINGFPRPGIKALLNQVNKKNELTITDVVFTVAPRINAAGRMKHGNYAVTLL
AEEDEALATKYAEEINAYNEDRRETDRRITEEALEQIKNNKEEDRITSVVYHESWHKGVI
GIVASRLTETYYRPTLVFTKSGDKLAASARSVVGFDVYNALEACSEHIEQFGGHKYAAGL
TLKEENYEAFKQAFEDEVTKTIDKSLLVPEIKIDAQININDITPKFYRILKQFAPFGPSN
MTPVFMTKNLMDTGWGKRVGADQTHLRVTVKQSDSNPIVGIGFGLGDKKDIISSQAPFDA
VYSVDENEWQGNVSLQLKLRDIK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacaataaaagcaaaaccagaaacccaaaaattaaaaaccctaaaagacgct
ttacaagtagatgatatcactgctacgttgttattacagcgtggcattgaaacgtttgat
gaagcgaaagcttttttccgccccgatttaaacgatttacataatccgtatcttatgaaa
gatatggataaagccgttacccgaatcgaagaagcttttgccaataacgaaaatattctg
gtttatggtgattatgatgttgatggcaccacctcggtggcactaatgagcttatacctt
aaaactagaagtgaccttgtggcgacatacattccagatcgttatgatgaaggttacggg
gtgtcgtttaaagggatcgactttgccagcgataacgattttacacttattgtcgcttta
gactgtggtattaaagcgattgataaagtggcttacgcaaaagaaaaaggcatcgatttt
atcatttgtgaccaccacagaccaggagatatcattcctgaggcgattgctgttttagat
ccaaaacgtagtgactgtgaatatccatataaagaattgtgtggatgtggtgttgggttt
aaactcattcaggctttagccgaacgggaaggaaaaaccattaaagatttagtcgggtat
ttagatttggtagcgacagctattggggctgatattgttccgattacaggcgaaaacagg
attcttgctttttacggattgagagttattaatggatttccgcgtccgggaattaaggcg
ttgctcaatcaggttaataagaaaaatgaactgaccattaccgatgtcgtctttaccgta
gcccctcgaattaatgctgccggacgtatgaagcacggtaattacgcggtgaccttatta
gcagaagaagatgaagctttggcaaccaaatatgctgaggaaataaacgcctataatgaa
gaccgacgtgaaaccgataggcgcattacagaagaggctttagagcaaattaaaaacaat
aaagaagaagaccgaatcacctcggtggtataccatgaaagctggcataaaggggttatt
ggtatcgtagcctcacgtttaaccgaaacgtattatcggccaactttggtgtttactaaa
agtggtgataaactggcggcatcagcgcgctcggtggtagggttcgatgtgtataacgct
ttagaggcgtgtagcgaacatattgaacaatttggaggacataaatacgccgctggacta
acgctaaaagaagagaactacgaagcctttaagcaggcttttgaagatgaagtgactaaa
actatagacaagagtttattagttcccgaaattaaaattgatgctcaaataaatatcaac
gacatcacccctaaattttatagaattttaaaacaatttgcaccttttggccccagtaat
atgaccccagtttttatgaccaaaaatttaatggatacgggttggggaaaacgtgttggt
gctgatcaaacgcatttacgagttaccgtaaaacagtccgattccaatcctattgtaggt
attggttttggcttgggcgataaaaaggatatcatttccagtcaggcaccttttgatgct
gtgtattcggttgatgaaaacgagtggcaaggcaatgtatctttacaacttaagttaagg
gatattaaataa
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