Aestuariibaculum sp. YM273: RBH94_08300
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Entry
RBH94_08300 CDS
T09314
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aest
Aestuariibaculum sp. YM273
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aest03032
]
RBH94_08300 (topA)
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_08300 (topA)
Enzymes [BR:
aest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RBH94_08300 (topA)
DNA replication proteins [BR:
aest03032
]
Prokaryotic type
DNA Topoisomerases
RBH94_08300 (topA)
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBH94_08300 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
RP-C
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WMI64071
LinkDB
All DBs
Position
1937893..1940394
Genome browser
AA seq
833 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKEFKVESSFGHISDLPSKELGVDVEGDFSPKYEVSKDK
KAVVKKLKDLAKKAEMVWLASDEDREGEAIAWHLAETLKLDKGKTKRIVFHEITKTAIQK
AIENPRGIDYDLVDAQQARRILDRIVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVERER
DIQNFTPEASYRIDAEFSNESGQVFKAKLPKNFETKEEAYAFLESNATADFKVAELDKKP
AKKSPAAPFTTSTLQQEASRKLYFSVSKTMTLAQRLYESGLITYMRTDSVNLSDEARQGA
EAEIEKAYGSKYSKPRNYVGKAKGAQEAHEAIRPTSFATHSVDLDRDQARLYDLIWKRAI
ASQMSEAELERTNVKVSASTHKELFTANGEVITFDGFLKVYLEGTDDEDVEQEGMLPAMK
VNETLLNKYITATERYSRPPARFTEASLVKKLEELGIGRPSTYAPTISTIQNRNYVEKGM
VDGTERDYTQLTLKEGAVATKVLTEKVGSDKGKLVPTDIGMIVTDFLVNHFEYILDYNFT
AKVEEDFDEIAEGKVDWSKMMKDFYKDFHPQVQDVQENADRESGERILGVDPKSGKQVSV
RLGKFGPMVQIGTADDEEKPQFASLSPDQQLNTITFEEAMDLFQLPKTLGTYEGESVEVN
NGRFGPYVKFGSAYVSLPKGQDPLSVELDDAIVLIKEKQEADAPIYYYKELPVQKGKGRF
GPFIKWNNMFINVNKKYDWDNLSDEDIVELIETKIQKEIDKVVHNWEDEGIKVEKARWGR
HNVIKGKVKVELAKTVDVSEMTLDEAKAIIEANAPKKKTAKKTTKKKTTAKKK
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaatttagtaattgtagagtcacctgccaaggcaaaaactattgaaaaattt
ttaggaaaagaatttaaagtagagtcaagctttgggcatatttcagaccttccttcaaag
gagttaggtgtggatgttgaaggtgattttagtccaaaatatgaagtttctaaggataag
aaagcggttgtaaaaaaactgaaggacttagctaagaaagccgaaatggtatggttagca
agtgatgaggaccgcgagggggaggctattgcatggcacttggcggaaactttaaaattg
gataaaggaaaaacaaagcgtattgtttttcatgagattactaaaacggctattcaaaaa
gcgattgaaaacccaagaggtattgattacgatttagttgatgcgcaacaggcacgtcgt
attttagatcgtattgtaggttacgaattatctccggtgctttggcgtaaggtaaaaggt
ggcttgtcggcaggtcgtgtgcagtcggtttcggtgcgattaattgtagagcgtgagcgt
gatattcaaaacttcactccagaggcgtcatatagaatcgatgctgagttttcaaatgaa
agcggacaagtatttaaagccaaattacctaagaattttgagactaaagaagaggcttat
gcctttttagaatctaatgcaacggccgattttaaagttgctgaattagataaaaagcct
gctaaaaaatcgccggcagcgccatttacaacttctacattacaacaggaagcttctcgt
aagttatatttttcggtaagtaaaaccatgaccttagcgcaacgcttgtatgagtcgggg
ttaattacctatatgagaacagatagtgtgaatttatctgatgaagcacgtcagggagcg
gaagctgaaatcgagaaagcatatggttctaaatatagtaaaccaagaaattatgttgga
aaagctaaaggagctcaagaagctcacgaggccatcagaccaacaagttttgcaacacat
tctgtagatcttgatcgtgatcaagcgcgtttgtacgacttaatctggaagcgtgctatt
gcttctcaaatgagtgaggcagagttagagcgtactaatgttaaagtgagcgcatctaca
cacaaggaattattcacggcaaatggggaggtgattactttcgatgggtttttaaaagtg
tatttagaaggtaccgacgacgaagatgtagagcaagaaggtatgttaccggcaatgaaa
gtaaacgaaacattgcttaataagtatataacggcgacagagcgatactcgcgtccgcca
gcacgttttactgaggcgtctttagttaagaagttagaagagttgggtattggtcgtccg
tctacttatgcgccaacaatttcaacaattcagaatcgtaattatgttgaaaaaggaatg
gttgacggaacagagcgcgattatacgcaactgactttaaaagaaggggctgtagcgaca
aaagtattgacagagaaagtaggttcagataaagggaagttagtaccaacggatattggt
atgattgtaacagactttttggtgaaccatttcgaatatatattagactacaactttaca
gcgaaagtagaggaggatttcgatgaaatagctgaagggaaagtagattggtctaaaatg
atgaaagacttctataaagattttcatccgcaagttcaggatgttcaggaaaatgccgac
agagaatctggagagcgtattcttggtgtagatccaaaaagtggtaagcaggtaagtgtg
cgtttaggtaagttcgggccaatggttcaaattggtactgccgatgatgaagagaagccg
caatttgcaagtttaagccccgatcagcaattaaataccattacctttgaagaagctatg
gatttatttcagcttccaaaaactttaggaacttatgaaggagaaagcgttgaggtcaac
aacgggcgttttggtccttacgtgaaatttggttcagcttatgtgtcattgcctaaagga
caggatccattaagtgttgaactggatgatgctattgtactaattaaagaaaagcaggaa
gctgatgctcctatatattattacaaagaattacctgttcaaaaagggaaaggacgcttt
gggcctttcatcaagtggaacaatatgtttattaacgtgaataaaaaatacgactgggat
aacttgtctgatgaagatattgtagagcttatcgaaactaaaattcaaaaagaaatcgat
aaagttgtgcataactgggaagacgaaggtattaaagttgaaaaagcacgttggggtaga
cataatgttattaagggtaaagttaaagtggaattagccaaaacagtagatgtatctgaa
atgaccttagatgaagctaaagctataatagaagctaatgcacctaaaaagaaaacggct
aaaaagacaacaaaaaagaaaacaacagctaaaaagaagtaa
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