Aestuariibaculum sp. YM273: RBH94_11080
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Entry
RBH94_11080 CDS
T09314
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH94_11080 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aest03021
]
RBH94_11080 (rho)
03019 Messenger RNA biogenesis [BR:
aest03019
]
RBH94_11080 (rho)
Transcription machinery [BR:
aest03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RBH94_11080 (rho)
Messenger RNA biogenesis [BR:
aest03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RBH94_11080 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA
AAA_22
Ndc1_Nup
Motif
Other DBs
NCBI-ProteinID:
WMI64602
LinkDB
All DBs
Position
complement(2570207..2571898)
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AA seq
563 aa
AA seq
DB search
MFEISQLNAKKLSDLQEIAKQLNIPKYRSLKKMDLVYQILDRQAADPKAVKAVVESSETA
TKEPKTKEAPKKEEPKKEAKKPRQRVQRTKPAPVKNETKKQEETPKADTPKPAAKAETPT
PAPAENKSEAKQEKTAKPHNQQQDRQKDHQHKQNQKKDNQHKNQHKNQKGNQSHVDAGNK
DNRNRYREPDFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLK
KGDTVLGNVRPPKEGEKYFPLIKVNKINGQKPEVVRDRVAFEHLTPLFPREKFNIAEKQS
TISTRIMDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYLMILLIDERPEE
VTDMQRNVRGEVISSTFDKEAHEHVKIADIVLEKAKRLVECGHDVVILLDSITRLARAYN
TVQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEF
KGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEATIQRMWVMRKYLADMNPVEA
MEFINDRVKQTRNNEEFLISMNG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttctcaattaaacgcaaaaaagctctctgatttacaagagattgctaaa
caattgaacatccctaagtatcgttcattaaaaaaaatggatttagtataccaaatacta
gatcgtcaggctgcagaccccaaagcagtaaaagctgtcgttgaatcttctgaaacagct
acaaaagaaccaaaaacaaaagaggccccaaagaaagaagaacctaagaaagaggctaaa
aagcccagacagcgtgtacaacgtacaaaaccggcacctgtaaaaaacgaaacaaaaaag
caagaggagactccaaaagcagacactcctaagcctgctgctaaagcagaaacacctaca
cctgcaccagctgaaaataaaagtgaagctaaacaagaaaaaacagctaaacctcataat
cagcagcaagatcgtcagaaagaccatcaacataagcaaaaccaaaagaaagataaccag
cataaaaaccagcataaaaaccaaaaaggtaaccaaagccatgtggatgcgggtaataag
gataacagaaaccgttaccgcgagcctgattttgagtttgatgctatcattgaaagtgag
ggtgttttagatattatgcaggatgggtacggatttttacgctcatcagattacaactat
ttatcgtctcctgatgatatttacgtatcacaatcgcagattcgtttattcggattaaag
aaaggtgataccgttttaggaaacgtaagacctcctaaagaaggtgaaaaatatttccct
ttaattaaggtcaataaaattaatggtcagaagccagaagtggttagagaccgtgtggct
ttcgaacacttaacgccattattccctagagagaaattcaatattgccgaaaagcaaagt
acgatttctaccagaattatggacctgttctctcctattggaaaaggacaacgtggtatg
attgtatcgcaacctaaaacaggtaaaaccatgttacttaaagatgtggctaacgctatt
gctgctaaccacccggaagtatacttaatgattttacttattgatgagcgtcctgaagag
gttaccgatatgcaacgtaatgtgcgtggtgaggttatttcatcgacgtttgacaaggaa
gcacacgagcacgtaaaaattgctgatatcgttcttgaaaaagcaaaacgcttggtagaa
tgtggtcatgatgtggtgattcttttagattcgattacacgtttagcacgtgcttacaat
acggtgcaaccagcctctggtaaaatattaagtggtggtgttgatgctaacgctttacac
aaaccaaaacgtttctttggtgcggcaagaaatattgaaaacggaggatctttaaccatt
attgcgacagcattaaccgaaacaggttctaaaatggacgaggtaatcttcgaagaattt
aaaggaaccggtaatatggaacttcagttagatagaaaaattgctaatcgtagaattttc
cctgctatcgaccttacctcttcaagtacacgtcgcgacgatttattattagatgaagct
accattcaacgtatgtgggtaatgcgcaagtatcttgccgatatgaaccctgttgaagcg
atggaattcattaacgatcgtgtgaaacaaaccagaaacaacgaagagtttttaatctcg
atgaacggataa
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