Aestuariibaculum sp. YM273: RBH94_11490
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Entry
RBH94_11490 CDS
T09314
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03420
Nucleotide excision repair
aest03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBH94_11490
03430 Mismatch repair
RBH94_11490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_11490
Enzymes [BR:
aest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBH94_11490
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBH94_11490
MMR (mismatch excision repair)
Other MMR factors
RBH94_11490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WMI64681
LinkDB
All DBs
Position
2672148..2674511
Genome browser
AA seq
787 aa
AA seq
DB search
MEKYLSQLNEAQLAPTIQKDGPMIVIAGAGSGKTRVLTYRIAYLMSQGVDAFNILSLTFT
NKAAREMKERIAAIVGQSEARNLWMGTFHSIFAKILRIEADKLGYPTNFTIYDSQDSDKL
IGSIIREMGLDKDIYKAKSIRSRISSYKNSLITVRAYFQNSELQEADAMARRPRMGDIYK
AYVDRCFKAGAMDFDDLLLKTNELLTRFPEVLMKYQNRFRYILVDEYQDTNHSQYLIVRA
LSDKFQNICVVGDDAQSIYAFRGANINNILNFQKDYDNVKLFRLEQNYRSTKNIVNAANS
IIDKNQTKLDKVVWTANDEGGKIVVNRSLTDGDEGRYVASTIWETKMNEQLDNKDFAVLY
RTNAQSRAIEDALRKRDIPYKIYGGLSFYQRKEIKDVISYLRLIINPADEEALKRVINFP
PRGIGATTVDRLVVAANGYNRSIFEVMKNIDKADVKINSGTKGKLQDFVTLIESYQVMNK
NADVFELAEHVTRTSGLIKEFKKDATPEGVTRMENIEELLNGMKDFVEGQREVADATASL
AEFLEDVALSSDLDSDKEDVDHVALMTIHLAKGLEFPHVFIVGLEEDLFPSAMSMNTRSE
LEEERRLFYVALTRAKKQAYLTYALSRYRWGKLVDADPSRFISEIDEQYLDITTPIEERR
INPMLDADIFGDVSPNTRQNVASNNIRFKPAKQANLKKGSAPKEQPKFQPNAPKKLTKVE
SSSSSGQEANLFDGKLVPGNIVNHMRFGKGEVLKIEGTGADVKAEIKFQQVGVKKLLLRF
AKLDVIG
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttggagaagtatttaagtcagttaaacgaggcgcagttagcacctaccattcagaaagat
ggaccaatgattgtgattgcaggtgcggggtccggaaaaacacgtgtgttaacctataga
attgcttatctaatgagtcaaggggttgatgcttttaatattttatcgttaacctttacc
aataaggctgcgcgtgaaatgaaagaacgtattgctgctattgtgggacaaagcgaagcc
agaaatttatggatggggacgtttcactcgatttttgctaagattttacgtattgaagct
gataaattaggctatccaaccaattttacgatttatgactctcaggattcagataaatta
attggttccattattcgtgaaatggggcttgataaagatatttacaaagcaaaatctatt
cgttccagaatatcgtcatacaaaaacagtttgataacggtacgtgcttattttcagaat
tctgaattacaggaagccgatgctatggcgagacgtccgagaatgggagatatttataaa
gcctatgtggaccgttgttttaaagccggtgctatggatttcgatgatttattattgaaa
accaacgagcttttaacccgtttcccagaggtgctgatgaagtatcaaaatagatttcgt
tacatactagtagacgagtatcaagataccaaccattctcagtatttaattgtacgggct
ttatctgataagtttcaaaatatttgtgtggttggggatgatgcgcagagtatttatgcc
ttccgtggtgcgaatatcaataatattttaaatttccagaaagattatgataatgtaaaa
ctgttccgattagaacagaattaccgttcgactaagaatattgtaaacgctgccaattcc
attattgataaaaaccagaccaagcttgataaggtcgtttggaccgctaacgatgaagga
ggtaaaattgtagtcaatcgttcattaaccgatggtgatgaggggcgttatgtggctagt
accatttgggaaactaaaatgaatgagcaactggataataaagattttgccgttttatat
agaacgaatgcgcagtcgagagctattgaggatgcgttgcgaaaacgtgatattccttat
aaaatttatggaggcttatcgttttatcaacgcaaagagattaaggatgtcatttcgtat
ttacgattaatcatcaatcctgccgatgaagaagcgttaaagcgcgtgataaactttccg
cctcgtggtataggcgcgactacagtagatcgattggtcgtggctgctaatggttataac
cgttccatttttgaggtgatgaaaaatatcgataaggctgatgttaaaattaactcagga
acgaaaggaaagctacaggattttgtaaccctgattgaaagttatcaggtaatgaataaa
aatgccgatgtattcgaattggctgaacacgtaacccgtaccagtggattaattaaagaa
tttaagaaagatgccacgccagaaggtgtaactcgtatggaaaacattgaagagttactg
aatggtatgaaggatttcgttgaggggcagcgagaagtggctgatgcaacggcatcttta
gcagaatttttggaagatgtggcactgtcaagcgatttagattctgataaggaagatgtt
gatcacgtggctttaatgaccattcacttagcaaaaggattggagtttcctcatgtgttt
atagtcggtttagaggaagatttattcccgagtgccatgagtatgaatacacgtagtgag
ctagaagaagaacgacgtttattttatgtggcattaacgcgtgcaaaaaaacaggcgtat
ttaacgtatgctttatccagataccgttgggggaaattggtagatgccgatccaagtcga
tttatttcagaaatagatgagcagtatttagatattaccacaccaattgaagagcgtcgt
atcaacccgatgctcgatgccgatatttttggagatgtaagtccgaatacaagacaaaat
gtagcctctaataatattcgatttaaaccagctaagcaggcaaatcttaaaaaggggagt
gctccaaaggaacaaccaaagtttcaaccgaatgctcctaaaaagttaacaaaggtggag
tcgtcaagttcatctggacaagaagctaatttgtttgatggtaaattagtgccgggaaat
attgtcaatcatatgcgtttcggtaaaggtgaagtcctaaaaatagaaggcacaggagcc
gacgtgaaagctgaaattaaatttcagcaagttggggttaagaaattgcttttacgtttt
gcaaaactagatgttataggataa
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