Aestuariibaculum sp. YM273: RBH94_15405
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Entry
RBH94_15405 CDS
T09314
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH94_15405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aest03019
]
RBH94_15405
Enzymes [BR:
aest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBH94_15405
Messenger RNA biogenesis [BR:
aest03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBH94_15405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
UTP25_NTPase-like
DUF4699
Motif
Other DBs
NCBI-ProteinID:
WMI65438
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All DBs
Position
3597909..3599261
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AA seq
450 aa
AA seq
DB search
MTFRDLNLNTPLYNALDDLGFTTPTPIQAEAFNIVSSGRDIVGIAQTGTGKTFAYMLPIL
KNLKFSKQENPRVLILVPTRELVVQVVEEIEKLTKYINTRVLGVYGGTNINTQKMAVAEG
LDILVATPGRLYDLALSRVLQLKSIQKLVIDEVDVMLDLGFRHQLINIFDILPEKRQNIM
FSATMTEDVDDLLNDFFTIPERVSIAVSGTPLENIQQTRYNVPNFFTKVNLLVHILNDTE
TFNKVIVFVSNKKIADKLFEELDLHFKEELCVIHSNKTQNYRLRSIEQFRNGENRILVAT
DVMARGLDIENVSHVINLDTPDYPENYMHRIGRTGRAERKGEAILLSTEKEQEARENIER
LMNMEIPVLELPEMVEISDQLLEEERTKVKERNNPTKRSEEDMPGPAFHEKKAKNQKENL
GGSYKFKIAKKYKKPKTRGDKNYNKRNKRK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgacttttagagatttaaatttaaacaccccgctatataacgccttagacgatttaggc
ttcacaacacccacgcctattcaggccgaagcttttaatattgtaagctcagggagagac
attgttggtattgctcagactggtactggtaaaacctttgcttacatgctgcctatttta
aagaatttaaaattctctaaacaggagaatccacgtgtactcattttagtgcctacacgc
gaattggtggttcaggtcgttgaagaaattgaaaaactaaccaaatatatcaatacccga
gtacttggtgtttatggtggcaccaacattaacactcaaaaaatggctgttgccgaaggt
ttagatattttagtcgctacacctgggcgtttatatgatttagctttaagtcgcgtatta
cagttgaaatcaattcaaaagttagtgattgatgaagttgatgtgatgctggatttaggg
ttcagacaccagctgattaatatttttgatatccttccggaaaagcgtcagaatattatg
ttctcagctacaatgacagaagatgtcgatgacttattaaacgacttctttaccattcca
gaacgtgtatcaattgctgtttcaggaacgccgttagaaaacatccagcaaacgcgttat
aatgtccctaacttttttaccaaagtcaacctgctagtgcatattctaaatgatacagaa
acctttaacaaggtaattgtattcgtatcgaataaaaagattgctgataaactgtttgag
gaattagaccttcatttcaaagaagaattatgtgtcattcactctaacaaaacccaaaac
tatcgtttacgtagtatcgagcaatttagaaatggagagaaccgtattttagttgccacc
gatgttatggctcgtggtctggacattgaaaacgtaagtcacgtaattaatttagacacc
ccggattacccggaaaactacatgcatcgtattggtagaactgggcgcgccgaacgtaaa
ggagaggctattctattatcgactgaaaaagaacaggaagcccgtgaaaacatcgagcgt
ttaatgaatatggaaattcctgttttagaattacctgaaatggtagaaatttccgatcag
cttttagaagaggaacgcaccaaagtaaaagagcgcaataacccgaccaaacgtagcgag
gaagatatgcctggtcccgcatttcatgaaaagaaagccaaaaaccaaaaagaaaactta
ggaggctcatacaaatttaaaatcgctaaaaaatataaaaagccgaaaacacgaggcgat
aaaaactataacaaaaggaacaaaagaaagtaa
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