Arsenophonus apicola ArsBeeUS: LDL57_05910
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Entry
LDL57_05910 CDS
T07906
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aet
Arsenophonus apicola ArsBeeUS
Pathway
aet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL57_05910 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aet03019
]
LDL57_05910 (rne)
03009 Ribosome biogenesis [BR:
aet03009
]
LDL57_05910 (rne)
Enzymes [BR:
aet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LDL57_05910 (rne)
Messenger RNA biogenesis [BR:
aet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDL57_05910 (rne)
Ribosome biogenesis [BR:
aet03009
]
Prokaryotic type
rRNA processing factors
LDL57_05910 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
UBX30140
LinkDB
All DBs
Position
complement(1280406..1283693)
Genome browser
AA seq
1095 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDY
GSERHGFLPIKEIAREYFPSHYQPHGRPNIKDVLKEGQEVIIQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAEAL
QQDLQYRLKHWQAIKKAAENRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKIVDMA
RHHIEAIGRGDFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHEVHAIVPVPIASYLLNEKRQSVTEIERRQHNIRVIIVPNDQMQ
SPHYNVIRIRKGEEVSALSYYLAQYHEAETNNQIDDAGGEKKLPEQPAISTFALQSQADT
KNAVVVKGKSSKQRKSTNKQTSTSLFNRITSFLKKLFTQSQPPIAETVKKSKNANDKRRN
SERRNNRRPTQRREQNDNIDNRQNHGNTDDPQTRKSRNQKSHFNDTQDSAARETQQQRRE
QRAERRRRQEEKRQQQLETKTQPLDKKETETEKTVVVPLRRQQRQLVQSVRITNSVAEQQ
NLPIDKEYQDIKLPITNGADSEPALLTTAPIMPTESIAKEKTINMPHVTEQAESHEASTN
SANERQDTIIPRRSRRSPRHLRVSGQRRRRYRDKNQDKSLVPLKMAVASPELSSGKVWIQ
YPIKLNESHEMSSNSKNMMTISEKTASSAKPIDGNDIIDKVETEEKTASISEAIQSTEIW
LLPDQSTATERSLPSAEILLIPIKNQATEQNEKACQPLTEAKVMSENSLNVMVEKQVQSG
AAADEQRQNSLSVNDEFFIADGINKDEHSVQEMSQEKIAILSDENCSHVQPNISSVTDVI
AKKTNHRKERITTLKTGKKTGFSSAPTTKAPAPEITESYLEIKAYVRPTITFHGKNGAGG
HVATNVATSKMFKPK
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaacaagaagagttgcgcgttgctcttgttgat
gggcaacgtctttatgacctagatattgaaaatcccggacacgaacaaaaaaaagcaaat
atttacaaaggcaaaattacccgtatagaacctagtttggaagcagcattcgttgactat
ggatcagaaaggcatggatttctcccaattaaagaaattgctcgtgaatatttccctagt
cattatcaacctcacggtcgccctaacataaaggatgttttaaaagaaggccaggaagtt
attatccaggttgataaagaagaacgaggaaataaaggggctgcgctaacgacttttatt
agtttagcgggcagctatcttgttttaatgccaaataaccctcgtgcaggtggaatatca
cgacgtattgagggtgaagatcgcacagaactgaaagaggcattatcctcattggagata
cccgatgggatgggattaattgtccgtactgcgggtgttggaaaatcagcggaagcgcta
caacaagatctacaatatcgtctcaagcattggcaagccataaaaaaagcagcggaaaac
cgagccgcgcctttcctaattcatcaagaaagtaacgtcattgtacgagcctttcgtgat
tacctgcgccctgatattggtgaaatcctgattgataatgcgaaaattgtcgacatggct
cgccatcatattgaagcgattggtcgtggcgattttgcaagtaaaattaaatactatagt
ggagatgttcccctttttagccattatcaaatcgagtcacagattgagtccgcttttcaa
cgtgaggttcgtttaccgtcgggtggtgcactggttatcgacaccactgaggcattaact
gctatcgatataaattcatcacgttcaacccgtggtggcgatattgaagaaaccgcattc
aacaccaatttagaagctgctgatgaaattgcccgtcaattacggttacgtgatttaggt
ggactgattgttatcgattttattgatatgacacctgttcgccatcagcgtgaagtcgaa
aaccgtttgcgtgaagcggtacgccaagatcgagcacgtatccaaatcgctcggatatca
cgatttggtctgcttgaaatgtcacgccaacgtttgagtccatcactgggtgaatccagt
catcacgtttgccctcgttgtagcggtacaggaacaattcgtgacaatgaatcactttca
ctctctattttacgtttaatcgaagaagaagcattaaaagaaaatacccatgaagtacac
gcgattgtaccggtacccattgcatcttatctactgaatgaaaaacgtcaatctgtcact
gaaattgagcgtcgacaacataatatacgtgtcattattgttcctaacgatcagatgcaa
tcacctcattacaatgtaattcgcattcgtaaaggtgaagaagtttcagccttaagttac
tatctcgcgcaatatcacgaagctgaaaccaataatcaaatagatgatgctggcggtgag
aaaaagctaccggaacaaccggctatttctacttttgctctccaatctcaagcagataca
aaaaatgccgtggttgttaagggcaaatcaagtaaacagaggaaatcaaccaacaagcag
acttcaacaagtctatttaatcgtattacctctttcttgaaaaaattatttactcaatcc
caaccacctattgcagaaacagtaaaaaaatcgaaaaacgctaatgacaaacgacgtaat
agtgaacgacgtaataatcgtcggccaactcagcgtcgtgaacagaacgacaatatagat
aaccgccaaaatcatggcaatactgatgatccgcaaacgcgtaagagccgtaatcagaaa
agtcattttaacgatactcaagatagtgctgcacgtgaaactcaacaacagcgtcgcgaa
cagcgagctgaacgtcgccgtcgtcaggaggaaaaacgacaacagcaacttgagacaaaa
acgcagccactagataagaaagagactgaaacggaaaaaacggtcgttgtcccgctccgc
cgtcaacagcgtcaattggttcaatcggtgaggatcaccaatagcgtggcagagcaacaa
aatctacctattgataaagaatatcaggatattaagttgcctattacaaatggtgcagac
tcagagcctgctttgttaactaccgcacccattatgccaactgaatcgatagcgaaagaa
aaaacaatcaatatgccgcatgtgacagaacaggctgaatctcatgaagcatctaccaat
tctgctaatgaacgacaagacaccatcattccgcggcgatcaagacgttctccccgtcac
ctacgcgttagcggacaacgtcgtcgtcgctatcgtgataaaaatcaggacaaatcctta
gtaccattaaaaatggccgttgcttctcctgaattatcttcaggtaaagtctggatccag
tatccgattaaattaaatgaatcgcatgaaatgtcatctaatagcaaaaatatgatgaca
attagtgaaaaaacagcatcttctgctaagccaattgatggtaatgacatcatcgataag
gttgaaacagaagaaaaaacagcatcaattagtgaagcgattcaatcaacggaaatatgg
cttttgcctgaccaatcaacggcgacagaaaggtctctaccctctgctgaaatattactt
attcccattaagaatcaagctactgaacaaaatgaaaaagcttgtcaaccacttactgaa
gccaaagtgatgtctgaaaacagtcttaatgtaatggtagaaaagcaagtacaaagtggt
gcagcagctgatgagcagcgacaaaatagtctatctgttaatgatgaatttttcatagcc
gatggaattaataaagatgaacattcagtccaagaaatgagtcaggaaaaaatagccatc
ttatcggatgaaaattgtagccatgttcagccaaatatatcttctgtgactgatgtcatt
gcaaaaaaaaccaatcatcgtaaggaaagaattaccacgttaaaaacaggcaaaaaaacc
ggtttttcctctgcccctaccacaaaggcaccggcgcctgaaattactgaaagctatttg
gaaattaaagcttatgtacgacctacaataactttccatggcaaaaatggtgctggcggt
catgtagcaaccaatgttgctacatccaaaatgtttaaacccaaatga
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