Arsenophonus apicola ArsBeeUS: LDL57_14725
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Entry
LDL57_14725 CDS
T07906
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aet
Arsenophonus apicola ArsBeeUS
Pathway
aet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDL57_14725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aet03021
]
LDL57_14725 (rpoC)
03400 DNA repair and recombination proteins [BR:
aet03400
]
LDL57_14725 (rpoC)
Enzymes [BR:
aet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDL57_14725 (rpoC)
Transcription machinery [BR:
aet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDL57_14725 (rpoC)
DNA repair and recombination proteins [BR:
aet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDL57_14725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UBX28990
LinkDB
All DBs
Position
complement(3094651..3098877)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNLDLEQECEVLREELNTTNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKRMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAEGEGMVLSGPKEAERVYRAG
LASLHARVKVRITEEVRDGEGNVETGTQLVDTTIGRAILWMIVPKGLPYSLVNQPLGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKASIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVVNREGQDEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDILVPGTADILIPRNTLLSEKWCDELEANSVDSVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGNIKL
VNAKFVKNSEGHLVITSRNTELRVVDEFGRTKESYKVPYGAHLNKGDGDGVNGGETVANW
DPHTMPVISEVAGIIRFSDMADGQSIIRQTDELTGLSSIVVLDTAERTAGSKDLRPALRV
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLDDGAAINIGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGGDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGAHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIADAGSSEFLEGEQVEYARVKVANRKLEQDGKVPATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHMVNEPV
ESSQVSADEATANLAELLNAGFGNQDHE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcacagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcatggtcatttggtgaagtgaaaaag
ccagaaacgattaactaccgaacgttcaagcctgagcgtgatggtcttttctgtgcgcgt
attttcgggccagttaaagattatgaatgtttgtgtggtaaatacaaacgattaaaacac
cgaggtgtgatttgtgagaaatgtggtgttgaggtcactcagactaaagtacgtcgtgag
cgtatgggtcatattgaattggcttcaccgacagcacatatttggttcttaaaatcatta
ccatcacgaattggtttgttgcttgatatgcctttgcgtgatattgagcgagtactctat
ttcgaatcctatgttgtggtcgaagggggtatgacaagcttagagcgtggacagatcttg
accgaagagcaatatcttgatgctttggaagagtttggtgatgaatttgacgctaaaatg
ggcgcggaagcgatccaatctttgctaaaaaatcttgatttagagcaagagtgtgaagtt
ttgcgtgaagagttaaatacaactaactctgaaactaaacgtaagaaattaactaagcgt
atcaaactactagaagcatttattcagtctggtaataagcctgagtggatgattctgaat
gtattaccggtattaccgccggatttgcgtccgcttgttccgctagatggcggccgcttt
gctacttctgatttaaatgatttatatcgtcgcgttattaatcgtaacaatcgtttaaag
cgtctattggatttggcggcgcctgatatcattgtacgtaatgaaaaacgcatgctacaa
gaagcggttgacgcattgctggataatggccgtcgtggacgtgcgattaccggctcgaat
aaacgtccgctgaaatctttggctgatatgatcaaaggtaaacaagggcgtttccggcag
aacttacttggtaaacgggttgattactcaggccgttccgttatcacggtgggcccttat
cttcgcttgcaccaatgtggtttgcctaagagaatggcattagaattatttaagccattt
atttatggtaaattggagttacgtggattagcgacaacgatcaaagcggctaagaagatg
gttgagcgtgaagaagcggtcgtctgggatattctcgatgaagtgattcgtgaacatcca
gtgatgctaaaccgcgcgccaacactgcatcgtctcggcattcaggcatttgaacctatt
ctgattgaaggtaaagctattcagttacaccccttagtgtgtgctgcttataacgctgac
tttgacggtgaccagatggctgttcacgtcccgctgactttagaagcgcagttagaagca
cgtgccttaatgatgtcgacaaataatattttgtcgccagccagtggtgaacctatcatt
gtaccttctcaagacgtggtgcttggtttgtactatatgacacgtgattgtgtaaatgct
gaaggtgaaggcatggtattgtctggaccgaaagaagctgaacgggtttatcgtgccggc
ttagcatccttacatgctcgcgttaaagtacgtattacagaagaagtgcgtgatggtgaa
ggtaatgttgagactggaactcagttagttgatactaccattggtcgcgctatcttatgg
atgatcgtaccaaaaggtctgccatactcattggttaatcagccgttgggtaaaaaagca
atttctaaaatgcttaatacttgttaccgcgttttaggtttaaaaccaacggttatcttt
gccgaccagatcatgtataccggttttgcttatgctgcgcgttccggggcttctgttggt
attgacgatatggtaataccggagaagaaagccagcattattgctgaagctgaagctgaa
gttgctgagattcaagaacagttccagtcgggtttagttactgcgggcgaacgttataac
aaagttattgacatttgggctgcggctaatgagcgggtcgcaaaagcgatgatggaaaat
ttatccactgaaaccgttgttaaccgcgaaggccaagacgagcaacaagtttcgtttaac
agcatctttatgatggctgattctggtgcgcgtggttctgcggcacagatccgtcagtta
gcgggtatgcgtggtttgatggccaagccagatggttcaattattgagacacccatcaca
gctaactttcgtgaaggtctgaacgtattgcaatacttcatttcaacacacggtgcacgt
aaaggtctagccgatacagccttgaagacagcaaactcaggttatctaacccgtcgttta
gttgatgttgcacaagatttggttgtcactgaggatgattgtggtactcacgatggtatt
ttaatgaccccggttattgaaggtggtgatgttaaagaacctttacgtgagcgtgtcttg
ggtcgagtcacagcagaagatatattagtaccgggtacagctgatattttaataccacgt
aacaccttattaagtgaaaaatggtgtgatgaactggaagccaactcggttgatagcgta
aaagtgcgctctgttgtaagttgtgaaactgactttggagtctgtgcgaaatgttatgga
cgagatttagcgcgtggtcatatcatcaataaaggtgaagcagttggtgttattgctgct
caatcaatcggggagccgggcacacagttgacaatgcgtacgttccacattggtggtgcg
gcatcacgtgctgctgcggaatcgagtattcaggtacgtaacaaaggtaatatcaaactg
gttaatgccaagtttgtaaaaaattctgaaggtcacttagttatcacttctcggaataca
gaattacgagtggtagatgaatttggtcgaaccaaagaaagctataaagtaccatatggc
gcacaccttaataaaggtgatggtgacggagttaatggtggtgaaaccgttgcgaactgg
gatccacataccatgccggttatcagtgaagttgcgggtattattcgtttctctgatatg
gcagatggacaatctattatacgtcagaccgatgaactaacgggcttatcatcaattgtt
gtgcttgatacagctgagcgtacggcgggtagtaaagatttacgtcctgcattgcgtgtt
gttgatgcgaaaggcaatgatgtattaattccgggtactgatatgccagcgcaatatttc
ttgcctggtaaagcgattgttcaattggatgatggtgcggcgattaatattggtgatacc
ttagctcgtattccacaagaatctggtggtactaaggatattactggtggtttaccacgg
gttgcagatctattcgaagcgcgtcgaccaaaagaaccggctattctggctgaaattagc
ggtattatttcttttggtaaggaaactaaaggtaaacgtcgcctagtgatcacaccaata
gatggtggtgatgcatacgaagagatgatccctaaatggcgccagcttaatgtctttgaa
ggtgagcgagttgagcgtggtgatgtgatttctgatggtccagaatcaccacatgatatt
ttacgtttgcgtggagcgcatgctgttgctcgttatatcacgaatgaagttcaagaagtt
tatcgtctacaaggcgttaaaattaacgataaacatattgaagttatcgttcggcagatg
ttacgtaaggtgaccattgctgatgctggtagctctgaatttttggaaggtgaacaagta
gagtacgcccgcgtgaaagtagcgaaccgcaaattagagcaagatggtaaagtaccggca
acctttagtcgtgatctgctaggtattaccaaagcgtctctagcgacagagtcctttatc
tcagcagcgtcattccaggaaacaacccgtgtgcttactgaagctgcggttgctggaaaa
cgtgatgaacttcgtggtttgaaggagaacgtcattgttggtcgtctaattcctgctggt
acaggttatgcatatcaccaagatcggatgcgtcgccgtcacatggttaatgaacctgtc
gagtcatcacaagttagtgctgatgaggcaacggcgaatttggcagaattgctaaatgcg
ggttttggtaatcaagaccatgaataa
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