Actinobacillus equuli subsp. equuli: ACEE_09335
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Entry
ACEE_09335 CDS
T03501
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aeu
Actinobacillus equuli subsp. equuli
Pathway
aeu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aeu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACEE_09335 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aeu03021
]
ACEE_09335 (rpoB)
03400 DNA repair and recombination proteins [BR:
aeu03400
]
ACEE_09335 (rpoB)
Enzymes [BR:
aeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEE_09335 (rpoB)
Transcription machinery [BR:
aeu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEE_09335 (rpoB)
DNA repair and recombination proteins [BR:
aeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEE_09335 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AIZ79952
LinkDB
All DBs
Position
complement(1988165..1992193)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIERDPDGQQGLEAAFRSVFPIV
SNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILTMFFDKITFEIQDNKLLMT
LVPERLRGETAQFDIEANGKVYIEKGRRITARHIRTLEKDDIKQIEVPVEYIVGKVAAKD
YVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETLRVDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLDIPEGVGSGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EDIEYLSAIEEGNYVIAQANSNLDEEFRFTDTYVTCRGEHGESGLYKPEDIHYMDISTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAK
RGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPVAR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
LTEELEILEAGLFTRVRNLLVEGGVSEAELDKVSREKWLEQTLDDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVRRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINKMIKQQQEVA
KLREYIQKAYDLGHGSQVVDLSTFTDEEVMRLAENLRKGLPLATPVFDGAHEAEIKGLLE
LGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHQMEPGMP
ESFNVLLKEIRALGIDMELDED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatattccgagaaaaagcgtattcgtaagagctttggtaagcgtccacag
gttcttaacgtaccttatctattaacaattcagcttgattcttttgaaaaatttattgaa
agagatccagatggacaacaaggtttagaagcggcattccgttcagtattcccaattgtg
agtaacaatggtgcgactgaattacaatacgtttcttacgaattaggtgagccggtattt
gacgttcgtgaatgtcaaattcgtggtacaacctatgcagcgccattacgcgtaaaatta
cgtttagtgacttttgatcgtgaagcggcagcaggcacggtaaaagacattaaagaacaa
aacgtgtatatgggcgaaatcccattaatgaccgacaacggtactttcgttatcaacggt
actgagcgtgtaatcgtatctcagttacaccgtagtccgggcgtattcttcgattctgac
aaaggtaaaacccactcatcaggtaaagtgctttataacgcacgtattattccttaccgt
ggttcttggttagactttgaattcgatccgaaagacaacctttacgcgcgtatcgaccgt
cgtcgtaaattacctgcaacaatcattctacgtgcattaggttacactaccgaagaaatc
ttaacgatgttcttcgataaaattacgttcgagatccaagataataaacttttaatgaca
ttggtacctgagcgtttacgtggtgaaacagcacaatttgatattgaagcaaacggcaaa
gtttatattgaaaaaggtcgccgtattaccgcacgtcatatccgtactttagaaaaagac
gacattaaacaaattgaagtgccggtagagtacattgtaggcaaagtagcagcgaaagat
tatgttgatctttcaacaggcgaattggtttgcccagcaaatatggaaatctcaatggag
atgttagcgaaattatcgcaagcaggctacaaagagatcgaagtgctcttcacaaacgat
ttagaccatggtccgtatatttcagaaacattacgtgtagatccaacttatgaccgctta
agtgcattagttgaaatttatcgtatgatgcgtccgggcgagccgccaacaaaagaagca
gcggaagcgttattcgataatatgttcttctcggcagaccgttatgatttatctgcggta
ggtcgtatgaaattcaaccgttcacttgatattccggaaggtgtcggttcaggtatttta
agcaacgatgacatcatcggtgtgatgaagaaactgatcgaaatccgtaacgggcgtggt
gaagtggatgatatcgaccacttaggtaaccgtcgtattcgttctgtaggtgaaatggca
gaaaaccaattccgtattggtttagtgcgtgtggaacgtgcagtacgtgaacgtttatca
ttaggcgatttagacggtattactccgcaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagagttctttggttcttcacaactttcgcaatttatggaccaaaataacccg
ctttcagaggttacacacaaacgtcgtatttcggcattaggtccgggcggtttaacccgt
gaacgtgcaggcttcgaggttcgagacgtacacccgactcactatggtcgtttatgtcca
atcgaaaccccagagggtccaaacatcggtttgatcaactcactttcggtatatgcacgt
accaataactacggtttcttagaaacaccattccgtaaagtagtaaacggtcaagtaacg
gaagatatcgagtatttatcagcgatcgaagaaggtaactacgttatcgctcaggcgaac
tctaacttagatgaagagttccgtttcactgatacatacgtaacttgtcgtggtgaacac
ggtgagtcaggtttatacaaaccggaagatattcactatatggatatctcaacacaacaa
gttgtttctgttgcggcagcgttaattccgttccttgagcacgacgatgcgaaccgtgcg
ttaatgggtgcgaacatgcaacgtcaggcagttcctacattacgtgcggataaaccactt
gttggtaccggtatggaaaaaccaatcgcacttgactcaggtgtggcgattgtggcgaaa
cgtggtggtactatccaatacgttgacgcatctcgtatcgtggtgaaagtaaacgaagat
gaaacgattccgggcgaagcaggtatcgacatctataacttaattaaatatacccgttca
aaccaaaatacctgtatcaaccaaattccttgtgtgaatttaggtgagccggtagcacgt
ggtgagatcttagcagacggtccttcaacagacttaggtgaattagcattaggtcaaaac
attcgtgtggcattcatgccatggaatggttataacttcgaagactcaatgttagtttct
gagcgtgtggtacaagaagatcgtttcacgacaatccacatccaagaattatcttgtgtg
gcgcgtgatactaaacttggtgcggaagaaatcactgcagatattccaaacgtaggtgaa
tcagcattaagcaaacttgatgaatcaggtatcgtgtacgttggtgcagaagttaaaggc
ggcgacatcttagtaggtaaagtaacgcctaaaggtgaaacccaattaacaccggaagaa
aaacttttacgtgcaatcttcggtgagaaagcatctgatgttaaagattcttcattacgc
gtaccaaacggtacttcaggtacagttattgacgttcaagtatttactcgtgatggcgtt
gaaaaagataaacgtgcattagaaatcgaggaaatgcagcttaaagaagcgaagaaagat
ttaactgaagagttagaaattttagaagctggcttattcacacgtgttcgtaacttatta
gttgaaggcggcgtatctgaagctgaattagataaagtttctcgtgagaaatggttagaa
caaaccttagatgacgaagcaaaacaaaatcaattagaacagcttgcggaacaacacgaa
gaattacgtaaagagttcgaacgtaaacttgaaattaaacgtaacaagatcatccaaggt
gacgatttagcaccgggtgtgttaaaagttgttaaagtttacttagcggttcgtcgtcaa
atccaaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatc
aacccagttgaagatatgccgtacgatgaaaacggccaaccggttgagatcgtattgaac
ccgctgggcgtaccttcacgtatgaacatcggtcagatcttagaaacacacttaggttta
gcggcgaaaggtatcggtgatcagattaataagatgatcaaacagcaacaagaagtggct
aaattacgtgaatatatccaaaaagcgtacgatttaggtcacggttcacaagttgttgat
ttaagtacctttactgatgaagaagtaatgcgtttagcagaaaacttacgtaaaggttta
ccgcttgcaacaccagtatttgatggtgcgcacgaagctgaaatcaaaggcttattagaa
ttaggtggcttaccgacttcaggtcagattacattatttgatggtcgtaccggtgagaaa
ttcgagcgtcctgtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgac
gacaaaatgcatgctcgttcaacaggttcttatagtcttgttactcaacaaccacttggt
ggtaaagcgcaattcggtggtcagcgtttcggtgagatggaggtttgggcattagaagca
tacggtgctgcttacaccttacaagaaatgttaacggttaaatcggatgacgtaaacggt
cgtacgaagatgtataaaaacatcgtagacggcacacaccaaatggaaccgggtatgccg
gaatcattcaacgtattgttgaaagagattcgtgccttaggtatcgatatggagttagac
gaagactag
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