Aequorivita ciconiae: EI546_00090
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Entry
EI546_00090 CDS
T05794
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aev
Aequorivita ciconiae
Pathway
aev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EI546_00090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aev03021
]
EI546_00090 (rpoC)
03400 DNA repair and recombination proteins [BR:
aev03400
]
EI546_00090 (rpoC)
Enzymes [BR:
aev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EI546_00090 (rpoC)
Transcription machinery [BR:
aev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EI546_00090 (rpoC)
DNA repair and recombination proteins [BR:
aev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EI546_00090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QAA80226
UniProt:
A0A410FZ85
LinkDB
All DBs
Position
14224..18525
Genome browser
AA seq
1433 aa
AA seq
DB search
MMNRNKENTVPRFNQISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKYEGGEAVKKLDFLTEEEYLAILDTLPQDNQY
LEETDPNRFIAKMGAECLIDLLQRIDLNTLSYNLRHKANNETSKQRKTEALKRLQVVEAL
RDANQTRENKAEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVAVPSQDMVLGLYYMTKLRKSTPEH
KVKGEGLTFYSAEEAIIAYNEGRVDLNAEIKIRTDDFNENRELVKRIITTTLGRVLFNEK
VPVEAGFVNEVLTKKSLRDIIGQILKVTNVPTTSAFLDEIKTLGYKFAFEGGLSFSLGDI
IIPEEKKTLIDDANSQVDSIINSYNMGLITNNERYNQVIDIWTATNAELTEYSMKRIRED
KQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSSAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINVEDCGTLRGIEVQSLKKNE
EVVETLGARIVGRIALNDVINPLTKELLVASGDHITEEIAEAIEASPLDSVEVRSALTCE
AKQGICSQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEQNK
LTVKFNGIADIDDLKTVKGEDSQGKAVDIVISRTAELKLVDKKTKITLSTNNIPYGSTLY
VKNGDTLQAGDVVCSWDPYNGVIISEFAGKIKYENIVQGVTYQVEIDEQTGFQEKVISES
RDKKRIPTLQILGKKDEVIRSYNLPVGAHIMVDDNEKIKIGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESRLGDVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILRIKGPSEVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVKIEDSGDTTFLEDQLVHKDDFIEENDKIFGMKVVTDAGDSQNLTEGQILTARAL
RDENSLLRRNDKQLAEAREAVPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDTLEGLKENVIVGHKIPAGTGMRAYDSIIVGSKQELEEMNRMKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatagaaataaagaaaatacagtaccgagatttaaccagatttctattggcttg
gcttcgcctgagtctattttggcagagtccagaggtgaggtacttaaacctgaaacaatc
aattaccgtacgcacaagccagagcgtgatggacttttctgtgagcgtatttttgggcct
gtaaaggactacgaatgtgcttgtggtaaatacaaaagaatccgttataaaggaattgtt
tgcgaccgttgtggagttgaggtaacggaaaagaaagtacgtcgcgatagagtagggcat
atcaatttggtggtgcctgttgcacatatttggtatttcagaagtttgccaaataagatc
ggttatcttttaggattgccgtccaagaaattggatatgatcatttattacgaacgatac
gtggttatccagccaggtatcgcaaaatatgaaggaggagaggcagtaaagaaattggat
ttccttacagaagaagaatacctagcgattctagatacccttccgcaggataaccaatat
cttgaggaaacagatccgaatagatttatcgccaaaatgggagcagagtgcttgatcgat
cttttacaacgaatcgatttgaatacgctgtcttacaacctgcgccataaagcaaacaat
gaaacttcaaaacaacgtaaaactgaagctttaaaaagacttcaggttgtagaggctctt
cgtgatgcaaaccaaacccgagagaataaagcagaatggatgattatgaaagtaatccct
gtaattccaccagagttacgtccattggtgccacttgatggaggacgtttcgcaacttcc
gatttgaatgatttgtaccgtcgtgtaattatccgaaacaatcgtttaaaaagattgatg
gagattaaagcaccagaggttattcttcgtaacgaaaagagaatgcttcaggaatcggta
gactccttgtttgacaacacccgtaaatcttcagcagtaaaaactgacagtaaccgaccc
ctgaaatctctttcagattccttaaaaggaaaacaaggtcgtttccgtcaaaacttgctt
ggtaaacgtgtggattattctgctcgttcggtaattgtcgttggacctgaattgaaattg
ttcgaatgtggtcttccaaaagacatggctgccgaactttacaaaccttttgtcatccgt
aaattgattgaaagaggaattgtaaaaacagtaaaatctgcaaagaaaattattgataaa
aaagagcctgtagtttgggatatccttgaaaatgttttgaaaggacacccagtgctacta
aaccgtgctccaacccttcaccgtttggggatccaagcgtttcagcctaaattgatcgaa
ggaaaagctatccagttgcacccattggtgtgtaccgcatttaacgcggatttcgatggt
gaccaaatggctgtccatcttccacttgggccagaagctatcctcgaagctcaattgctg
atgcttgcatcccacaacattttgaaccctgcaaatggttcaccagttgcggttccttca
caggatatggttttgggtctttattatatgactaagctaagaaagtcaacacctgagcat
aaagttaaaggtgaaggtcttactttctactctgctgaggaagcaattatagcttacaac
gaaggaagagtggatctgaacgcagagattaaaatccgcacagatgattttaatgaaaac
agggagttggtaaaacgaattattactacaaccttagggagagtgcttttcaatgagaaa
gtacctgtagaagccggtttcgtaaatgaggttttaaccaagaaatcgcttagggatatt
attggacaaattctgaaagttaccaacgtacctacaacttctgctttccttgatgagata
aaaactcttggatataagtttgcatttgaaggtggattatcttttagtctaggtgatatt
attataccagaagagaagaaaacacttattgatgatgccaattcacaagtagatagcatt
atcaatagctataacatgggtcttattaccaataacgaacgttataaccaggtaattgat
atttggactgcaaccaacgctgagcttaccgaatattctatgaagagaattcgtgaggat
aaacagggctttaactcggtatatatgatgcttgactctggagcgaggggttctaaggaa
caaattcgacagcttacaggtatgcgtggattgatggccaagcctaaaaaatccagtgca
gggggtggggaaattattgaaaaccctattctttctaactttaaggaaggtctttcaatt
ctggaatattttatttccactcacggtgctcgtaaaggtttagccgatacggctcttaaa
acggcggatgcgggttacttgacacgtcgtttggtggacgtttcacaagatgttattata
aacgttgaggattgtggaacgctaagaggaattgaagttcaatcgttgaagaagaacgag
gaagttgtagaaactttaggtgccagaatcgttggacgtatagcccttaatgatgttatc
aatccgttgaccaaggaattgttggtagcttcgggtgatcatattaccgaagaaatagct
gaagcaattgaagcttctccgttggatagtgtagaagttcgttctgcgcttacttgcgaa
gctaaacaaggtatctgttctcaatgttacggtcgaaacctagctaccaataaaatggta
cagcgaggagaagcggttggtgttgttgcagcgcaatccattggagagccaggtacacag
cttacactacgtacgttccacgttggaggtattgcaggaaacatttctgaacagaataaa
cttactgttaaatttaacggaatcgccgacatcgacgatttgaaaaccgttaaaggagaa
gacagtcaagggaaagctgtggatattgttatttcacgtactgcagagcttaaacttgtg
gataagaagactaaaattactttaagtacaaataacattccttatggttctaccctttat
gtgaaaaatggagatacccttcaagctggagatgtagtttgttcttgggatccatataac
ggtgtgatcatttcagaatttgctggaaagattaaatatgaaaacattgttcaaggggtt
acctatcaagtggaaattgatgagcaaactggtttccaagaaaaagtaatttcagagtca
agagataaaaaacgaatcccgacattacagattcttggtaaaaaagatgaggtaatccgt
tcttataacttgccagttggtgcccacattatggtggatgacaatgagaagattaagatt
ggtaaggtacttgtgaaaattccaagaaaatctgccaaggcgggagatataactggaggt
cttccaagagttacggagcttttcgaagctcgtaacccttcaaacccagctgtggttagt
gagattgacggggttgtttcttttggaaagattaaacgaggaaaccgtgaaattataatc
gaatccagactaggagatgttaaaaagtacttggttaaactttcgaaccaaatcttggtt
caggagaatgactatgtacgcgcaggaatgccactttctgatggttcgataactccagaa
gatatcctaagaattaaaggaccttctgaggtacaacaatatcttgtgaatgaagttcag
gaagtataccgtcttcagggtgttaagattaacgataagcactttgaagtagttgtaaga
cagatgatgcgcaaggtgaaaatagaggattctggtgacactactttccttgaggaccaa
ttggttcataaggatgattttatcgaagaaaatgataagatcttcggaatgaaagtagtt
accgacgctggagattctcaaaacctcaccgaaggacagattcttaccgctcgtgcctta
agagatgaaaactcactcttaagaagaaacgataaacaattggccgaagcgcgtgaagct
gttccagcaaccgcaactcccgtactacaaggtattacaagagcttcgcttcagaccaaa
tcatttatctctgcggcatcgttccaggaaaccactaaagtattgaacgaagcggccgtt
gccggtaaagttgataccttggaaggtttgaaggaaaacgttattgtaggacataaaata
ccagccggaacaggtatgcgtgcttatgactcaataattgttggctccaaacaggagttg
gaggaaatgaaccgtatgaagcaagaagtaaattataattaa
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