KEGG   Aequorivita ciconiae: EI546_00500
Entry
EI546_00500       CDS       T05794                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aev  Aequorivita ciconiae
Pathway
aev03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aev00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EI546_00500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aev03021]
    EI546_00500
   03019 Messenger RNA biogenesis [BR:aev03019]
    EI546_00500
Transcription machinery [BR:aev03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     EI546_00500
Messenger RNA biogenesis [BR:aev03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     EI546_00500
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT
Other DBs
NCBI-ProteinID: QAA80307
UniProt: A0A451FSD1
LinkDB
Position
complement(102143..103987)
AA seq 614 aa
MFDISELKNKKLPELQDIAKELNVPKYRTQKKLDLVYQILDYQAANPKAVKAVLSAESSE
TEDTKQVNKTEAPKEVSEKKDSNPRSQQVDDRNKGSQASKPHSQKNQPQKSHSQKSQHSS
TTGGSDKKQGEDKRTTPDKSDRSDKTDRSDRMDRTDKMDKSDKTDRSDRSDRPDRSSSDK
KQQHQQKQSSGDQDSRQKHQRSDSHNTDNRQKHQSNKQKDGNVQDNKNGNKDSRNRYREP
DYEFDGIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKSGDTVLGEV
RPPKEGEKYFPLIKVNKINGLSPNVVRDRVSFEHLTPLFPQEKFNIADKQSTISTRIIDL
FAPIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQRNVR
GEVVASTFDKEATEHVRVANLVLDKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKI
LSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQ
LDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWVMRKYLADMNPVEAMEFINDRIK
KTRNNEEFLISMNG
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtttgacatttcagaattaaaaaacaaaaagcttcccgaacttcaggatatagcgaaa
gaactcaatgtgccaaaataccgcacacaaaaaaagctggatctagtatatcaaattctt
gattaccaagctgctaatccaaaagcagtaaaagctgttctgagcgctgaatcttcagaa
actgaagatacaaaacaagtaaataagactgaagcaccaaaagaagtcagtgagaaaaag
gattctaatcctcgttcgcagcaggtcgacgaccgcaataaaggttcacaagcttcaaaa
ccacattctcagaagaaccaacctcagaaatcccattctcaaaaatcccaacattcgagc
accactggcggttccgacaagaagcaaggtgaggataagcgtacaacaccagataaatcg
gatagatctgataaaactgataggtcggatagaatggacagaacagataaaatggataaa
tctgataaaacagatagatcggacagaagcgatagacccgatagatctagtagtgataaa
aagcaacaacatcagcaaaaacaaagttctggcgaccaagacagccgtcaaaaacaccaa
cgatctgatagccataatacggataacagacaaaaacaccaatctaataaacaaaaagat
ggcaacgtacaggataacaagaatggaaacaaggattccagaaaccgttatcgcgagccg
gattatgaatttgatggtattatcgaaagcgaaggtgtcctagatattatgcaggatggc
tacggatttttaagatccagtgattataattacttatcctcacctgacgatatttacgtt
tcccaatcacaaatcagattattcggattaaaatccggggatacagtactgggagaagtt
cgacctcccaaggaaggagaaaagtatttccctcttattaaggtgaacaaaataaatggt
ttaagtcctaatgttgttcgagatagagtttcattcgagcacttaacacctctttttcca
caagaaaagttcaacattgccgataaacaaagcactatttccacacgaattatagatctt
tttgcacctattggaaaaggtcagagaggaatgatagtatctcaacccaaaacgggaaaa
acgatgctgctgaaagatattgccaacgcaattgctgctaatcaccctgaggtttatcaa
atcatattacttatcgatgaacggcctgaagaggttacggatatgcagcgaaacgtacgt
ggcgaagttgttgcttctacctttgacaaggaagctacggagcacgttcgggttgcaaac
ctagtactggacaaagccaaaagattggtggaatgtggacatgacgtcgtaattctttta
gattccattacacgtttggccagagcctacaataccgtacaacctgccagtggtaagatt
ttaagtggtggtgttgatgccaatgcccttcacaaaccaaaacgtttctttggagctgcc
cgaaatattgaaaatggcggctctttaagtattattgcaacggctctgactgaaacaggc
tcaaagatggacgaagtaatatttgaggaatttaagggaaccggtaatatggaactacag
ttggacagaaagatttccaaccgaagaattttcccagctattgaccttacttcatccagt
acacgtcgcgacgacttgttacttgatgaaaacaccattcaaagaatgtgggtgatgaga
aaatatctagctgatatgaaccctgtggaagctatggaatttattaatgacaggatcaag
aaaaccagaaacaacgaagaatttctcatatcgatgaacggataa

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