Aequorivita ciconiae: EI546_00900
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Entry
EI546_00900 CDS
T05794
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aev
Aequorivita ciconiae
Pathway
aev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI546_00900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aev03019
]
EI546_00900
03009 Ribosome biogenesis [BR:
aev03009
]
EI546_00900
Enzymes [BR:
aev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI546_00900
Messenger RNA biogenesis [BR:
aev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI546_00900
Ribosome biogenesis [BR:
aev03009
]
Prokaryotic type
rRNA helicases
EI546_00900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF4358
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QAA80376
UniProt:
A0A410FZE6
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All DBs
Position
184425..186227
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AA seq
600 aa
AA seq
DB search
MTAFKALGLEENLLKAITDMGFETPSEVQEKAIPILLDRETDMVALAQTGTGKTAAFGFP
MLQKINVESRTTQGLILSPTRELCLQITNEMIAYGKYLPGLNVTAVYGGASITDQARQIK
RGSQIIVATPGRMKDMIGRGLVDISKIEYCVLDESDEMLNMGFYDDIIEILSHSPKDKST
WLFSATMPKEVAAIAKKFMHSPVEITVGAKNKGADNVTHEYYLVNARDRYNALKRLADAN
PDIFSVIFCRTKRDTQKVAEQLIEDGYNAAALHGDLSQSQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKTGISMVIVSKSEVRKIRTIEKI
IQKQFVAKEIPSGMEICEVQLFHLANTIKETKINDEINPYLPNINEVLEDFTKEELIKKV
FSVEFTRFFNYYKSSKDLNISGDRSSSESEDKDTTRYFINIGGKDDFDWMSLKDFLRDLL
QLGRDDVYKVDVKDSFSFFNTDEKHQELVMGIFKDFKLEGRQINIEISQDTGRKGGGGKD
RGKRRGGNDRREDGGGRQGDFKKRRGSFDGGDRSKFQGKGRRGSERPQTAGTGGRRRRKV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttaaagcactcggcttggaagagaatcttctaaaagccatcaccgacatg
ggttttgaaactccttcggaagtacaagaaaaagccatcccaatcttattggaccgtgaa
accgacatggtcgctctagcccagacaggaactggcaaaacagcagcattcggatttcca
atgttgcaaaaaatcaatgtagagagtcgaactactcaagggcttattctttcgcctaca
cgagaactttgtcttcaaattactaacgagatgattgcctatggtaaatatttgccaggt
ttgaacgttacggcagtttatggaggggcaagtattacagatcaagcacgccagataaaa
agaggttcgcagataattgtcgctactcctggccgtatgaaagatatgatcggccgtggc
ttggttgatatttcaaaaatagaatattgtgttcttgatgagtccgatgaaatgctcaac
atgggcttttatgacgatattattgaaattctttcacattcgcctaaagataaaagcact
tggcttttcagcgcaactatgccaaaagaagttgctgccatagccaagaaatttatgcac
tccccagtggaaatcaccgtgggtgcaaaaaacaaaggagccgataacgttacccatgaa
tactatttggtaaatgccagagaccgttataacgctctaaaaaggttggctgatgcaaat
cctgatatcttttcggtaattttttgccgaaccaagcgcgatacccaaaaggtagcagag
caacttattgaggatggatataacgccgctgcgcttcacggtgatttaagccaaagccaa
agagatttggtaatgaaatccttcagaaaccgccaaattcaaatgcttgttgcaactgat
gttgccgcccgtggcattgatgtggatgatattacccacgtaattaactatcaattaccg
gatgaaattgaaatctacacccaccgtagcggtcgtactggtcgagctgggaaaactggt
atctctatggtaatcgtttcgaaaagtgaggttcgaaaaatcagaactattgaaaaaatt
atccaaaaacagtttgttgcaaaagaaattccttcaggaatggaaatttgcgaagtgcaa
ttgttccacctcgccaatactatcaaggaaacgaaaataaatgatgaaatcaatccatac
cttcccaatataaatgaagtgttggaagatttcactaaagaagagctgattaaaaaagtg
ttctcagttgagtttacccgcttttttaattattacaagagttccaaggatcttaatatt
tccggagatcgtagttcttcagaatcagaagacaaggataccacccgttactttataaat
attggaggaaaagacgatttcgattggatgagcctcaaggattttctacgggacctgctt
caattaggtagagatgatgtttataaggtcgatgtaaaagatagtttttcatttttcaat
accgacgagaaacatcaggagttggtaatgggaatcttcaaggatttcaaattggaagga
aggcaaatcaatattgaaataagtcaggatactggtcgcaaaggcggtggcggtaaagat
cgcggcaagagaagaggtggaaatgatcgacgtgaagatggtggtggacgacaaggcgac
tttaaaaaacgccgtggaagttttgatggtggagataggtccaaattccaaggtaagggc
agaaggggaagcgaacgtcctcaaactgcaggtacaggcggaagacgcagaagaaaggtc
taa
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