Aequorivita ciconiae: EI546_11400
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Entry
EI546_11400 CDS
T05794
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aev
Aequorivita ciconiae
Pathway
aev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI546_11400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aev03019
]
EI546_11400
03016 Transfer RNA biogenesis [BR:
aev03016
]
EI546_11400
Enzymes [BR:
aev01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EI546_11400
Messenger RNA biogenesis [BR:
aev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EI546_11400
Transfer RNA biogenesis [BR:
aev03016
]
Prokaryotic type
tRNA degradation factors
EI546_11400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
WSLR
DbpA
DUF2400
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QAA82287
UniProt:
A0A410G4T1
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All DBs
Position
2594641..2596881
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AA seq
746 aa
AA seq
DB search
MPKYKKKKNKIENLSQTILDILRKDHSKPYTYKQIAAKLQLDDASSRNQIIKKLKDLQHK
GSIQEIERGKYILTPSQNYYTGRVDIAGRGQGYIIVEDLEDDIFVSNKNLNKALNGDTVE
VYVFKRKRGGKSEGEVTKILERKRTEFVGTIQVHDNFAFVNVSDGKMYTDIFVPKDKING
AKNGEKVLVAMEDWPEKAESPFGSVIKILGMPGEHNTEIHSILAQYGLPYEFPQEVEDYA
NQIDTSIKESEIKKRRDMRSDLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVSHY
VTPGNVLDDEAYERATSVYLVDRVVPMLPEILSNNACSLRPDEEKYTFSAVFEINPKAEV
VNQWFGKTVTLSDARFAYEEAQHIIETNETSSTSYSPGINSVEKSFNFEIPANISISDKE
YVVKPEIAEAILEMDKLAKILRRKRMRAGAISFDKVEVKFILDENSNPIGVYFKESKDAN
KLIEEFMLLANRSVAEYIGKQKPQKTFVYRVHDEPDDEKIAALENIIKRFGYKLNTKDRH
STATSMNKLLKDVQGKKEQNLIDTLAIRSMSKAIYTTHNIGHYGLAFDYYTHFTSPIRRY
PDIMVHRLLQHYLENGKSANEEEYEEKCAHCSDMENLATNAERDSIKYMQIKYMQDHKDE
EFVGVISGVTEWGIYIEIISNKCEGMVRLQDLQDDRFEFDRDEYAVIGQRTHNVYRLGDE
VNVKVKNADLVKKHLDFTMLGHHEEK
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatataaaaagaagaagaataaaattgaaaatctttcccaaaccatactagat
attcttcggaaagatcattcaaaaccctatacctacaaacagattgctgctaaattacaa
ttggatgatgcgagcagcagaaatcaaataatcaaaaaacttaaggacttacagcacaaa
ggcagcattcaggaaattgagcgcggcaagtatattcttacaccttcccaaaattattat
acaggaagggtcgacatcgctggtcgtggccagggttacattattgttgaggatttagaa
gacgacatatttgtaagtaataaaaatctgaataaagcactaaatggtgatacggtcgaa
gtgtatgtttttaagagaaaaagaggtggaaaatctgagggggaagtaacaaaaatccta
gaacgtaaacggacggaatttgtaggaaccattcaggtgcatgacaattttgcttttgta
aatgttagcgacggtaagatgtacaccgatatttttgttccaaaggataaaataaatgga
gccaaaaatggtgaaaaggtattggttgccatggaagattggcctgaaaaagccgaatct
ccttttggtagtgttattaaaattcttggaatgcccggggagcacaatactgaaattcat
tctattctcgcccaatatggactgccgtatgaatttccgcaggaggttgaagattatgcc
aatcaaattgatacttccatcaaggaatccgaaattaagaaacgaagggatatgcgaagt
gatcttactttcaccatagatccaaaagatgcgaaggattttgacgatgccctttctttt
aaaaaattagaaaatggtaattacgaaattgggatccatatagccgatgtttcgcattat
gtaactccaggcaacgtgctggacgatgaagcttatgaaagagctacttccgtttatttg
gtagatagagtagttccgatgcttcctgaaatcctttccaacaatgcctgttcccttcgt
cctgatgaagaaaaatatactttttctgcggtgtttgaaataaatccaaaagcagaggtt
gttaatcaatggtttgggaaaacggtcactcttagcgatgctcgttttgcttatgaagaa
gcgcaacacattatagaaacaaatgaaacttcgagcacatcgtattcgcctggtataaac
tctgtcgagaagtcttttaattttgaaatcccggcaaatatttcaatcagcgataaggaa
tatgttgttaaacccgaaatagctgaagcaatcttagaaatggataagcttgcgaaaata
ttacgaaggaaaagaatgcgcgcaggagcgatctcctttgacaaagtagaagtaaaattc
attttggatgaaaatagcaatcctattggagtttattttaaggaaagcaaggatgctaat
aaattgattgaggagtttatgcttttggcaaatagaagtgtggccgaatatataggaaag
caaaaaccacaaaaaacatttgtttaccgagttcacgatgaacctgatgatgaaaaaatt
gctgctttggaaaatattattaagcgctttggttataaattgaataccaaggaccgtcat
tccacggcaacatcaatgaacaaacttttaaaagatgttcagggaaagaaggaacaaaac
ttaatagatacccttgctattcgcagtatgagcaaagcaatatatactacccataatatt
ggacattacggactcgcctttgattattatacacacttcacttcacccattcggcggtat
ccagatattatggtccaccgactgttgcaacattatctggaaaacggtaaatcggcgaat
gaagaagaatacgaggaaaaatgtgcccactgtagcgatatggagaatcttgcaactaat
gccgaacgcgatagtattaagtatatgcagattaagtatatgcaagatcataaagatgaa
gagtttgtaggtgttatttctggagttaccgaatggggaatttacatagaaattatatcc
aataaatgtgaagggatggttcgattacaggaccttcaggatgaccgattcgaatttgat
cgcgatgaatatgcggttatcgggcagcgcacgcacaatgtctatcgtttaggtgatgaa
gtaaacgtaaaagtaaaaaatgcggatttagtgaagaagcatttagattttacgatgctg
ggacatcatgaggaaaaatga
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