Actinidia eriantha (wild kiwifruit): 130751721
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Entry
130751721 CDS
T09464
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130751721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130751721
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130751721
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130751721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
SLFN-g3_helicase
ABC_tran
PhoH
AAA_30
DUF6259
NB-ARC
AAA_16
ATPase
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
130751721
NCBI-ProteinID:
XP_057461350
LinkDB
All DBs
Position
17:complement(13151542..13180581)
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AA seq
719 aa
AA seq
DB search
MPSVASGGVKDSTQSNNQPSGTPSKADFFTRKQRIAQQRKSLPIASVEKRLVEEVRSNDI
LIIVGETGSGKTTQIPQFLFNAGFCHDGKIIGITQPRRVAAVSVARRVAEECGVELGQKV
GYSVRFDDMTSSSTRIKYMTDGLLLREALLDQYLSRYSVIIVDEAHERTVPTDVLLGLLK
SVQKLRSGPVNQLPNIEHMKPDNVVLMDKKNDAQGASILKQCQGGIKLSPLKLIIMSASL
DARXFSKYFGDAKAVHVQGRQFPVDILYTRHPETDYVDAALITIFQIHLEEGPGDILVFL
TGQEEIESSERLVKERLRQLPEDKQLLKVLSIFSSLPSEKQMQVFMPAPTGFRKVILATN
IAETSVTIPGIKYVIDPGLVKARQYSARTGMESLIIVPTSKAQALQRSGRAGREGSGKCF
RLYPEREFEKLKDSTLPDILRTDLSNVILQLKALGVDNILAFDFMEKPKSEAVVKSLELL
ALLGALTDEYKLSDPVGHQMARLPLDPTHSKALILASQFNCLEEMLIAVAMLSVESIFYT
PREKLEEARTATKCFSSLEGDHQTLVNVYRASDEFFEKTKMGNSREKAEKNLRKWCKENF
INSRSLRHARDIHRQIRENVEHMGLRVASCGDETIQFRRCLAATFFLNAALKQPDGTYKV
LSSGQTVQIHPTSVLFRKKTECIIFDDLLRTNNNYMRNVTRIDYLWLPELAPQYYALKG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagtggcttccggcggagtcaaagactccacgcagagcaataatcaaccctcc
ggcacaccatccaaagccgacttcttcactaggaagcaaaggattgcgcagcagagaaaa
tccctaccaatcgcttcagttgagaaacgacttgtggaagaggtcaggagtaacgacata
ctgataattgttggtgaaactggaagtggaaaaacaacacagataccacagttcttattt
aatgcgggattctgccatgatgggaaaatcattgggatcactcaacctagacgtgttgca
gctgttagtgttgcaagaagggtagctgaggaatgtggtgttgagttgggccaaaaagtt
gggtactccgttcgatttgatgatatgacgtccagttcaactaggatcaaatacatgaca
gatggattgctattgagggaagcattattggaccaatatctctctaggtactcagttatt
attgttgatgaggctcatgagagaactgtacccactgatgtcttgctgggattactgaaa
agtgttcagaaactgaggtcgggacccgtcaatcaactccctaatattgaacatatgaag
ccagacaatgttgtgctgatggataaaaaaaatgatgctcagggtgctagtattctcaag
caatgtcagggtggtataaagctcagtccattgaagttaatcatcatgtctgccagtctg
gatgcacgtngcttttctaagtactttggtgatgcaaaagctgttcatgttcaaggccga
cagtttcctgtcgatatactgtacactcgtcatcctgagacagattacgttgatgccgct
ttaataactatatttcagatacatttggaagagggtccaggtgatatactcgtattcctg
actggacaagaagagattgaatcatctgagaggcttgtcaaagaaagactccgacagtta
ccggaagacaaacaattgctaaaagttttgtcgatattctcatctcttccctcagaaaag
cagatgcaggtcttcatgcctgctccaactggctttcgcaaggtaatactggcaactaat
attgctgaaacatctgtaacaattcctggaattaagtacgtgatagatcctggattggtg
aaagctcgccagtactccgctcgtacaggaatggaatcattgattattgttccaacctca
aaagctcaggctctccaaaggagtgggcgtgcaggccgtgaaggatctggcaagtgcttt
cgactctatcctgagagagaatttgaaaaactcaaggattccacacttccagatattttg
cgtacggacctttcaaatgtgattttgcaactcaaggctcttggtgttgataatattctt
gcgtttgacttcatggaaaaaccgaaaagtgaagctgtggtcaaatcattggagttactg
gccttgctaggtgctttaacagatgaatataaattgtcagatccagttgggcatcaaatg
gcccggttgcccttggatcctactcattccaaggcactcatcctggctagtcagttcaat
tgcttggaagaaatgttaatagctgttgcaatgctttcagtggaatctattttctataca
cctcgtgagaagttagaggaggcacgaactgcaacaaagtgcttctctagtctagaggga
gaccaccagactttggttaatgtatatcgggcttctgatgagttcttcgagaagaccaag
atggggaacagtagagaaaaggctgaaaaaaatctgaggaaatggtgcaaggaaaatttc
atcaatagccgctccctaaggcatgctcgtgatatacacaggcaaattcgggaaaatgtt
gaacacatgggtctacgtgttgcttcatgtggagatgagacgattcaatttcgccgttgc
cttgctgctacttttttcctcaatgcagctttgaagcagcctgatggtacatacaaggtt
ttgtcaagcggtcaaacggtgcagatccaccctacgtctgtgttattccggaaaaagaca
gagtgcataatctttgatgacttactccggactaataataattacatgcgcaatgttact
agaattgattacttatggttgcccgagctggctcctcaatactatgccttgaaggggtag
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