Actinidia eriantha (wild kiwifruit): 130751801
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Entry
130751801 CDS
T09464
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130751801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130751801
03009 Ribosome biogenesis [BR:
aew03009
]
130751801
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130751801
Spliceosome [BR:
aew03041
]
Complex A
U2 snRNP components
U2 related factors
130751801
Complex B
130751801
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130751801
Ribosome biogenesis [BR:
aew03009
]
Eukaryotic type
90S particles
Helicases
130751801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
FtsK_SpoIIIE
AAA_30
T2SSE
AAA_7
Flavi_DEAD
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
130751801
NCBI-ProteinID:
XP_057461489
LinkDB
All DBs
Position
17:19941923..19948968
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDDTSAAAAKLAKSNGGVVHGNSNSTAALINRWNGRPYSQRYYDIL
EKRKTLPVWHQKDEFFEVLKSNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKFMI
GCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD
PLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP
LMKVPGRLHPVEILYTQDPERDYLEAALRTVGQIHMYEPPGDILVFLTGEEEIEEACRKI
SKEVANMGDNVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGPPGRKIVVSTNIAETSL
TIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCYRLYTEK
SFNNDLQSQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGA
LDDEGNLTKLGEIMSEVPLDPQMAKMLVVSPKFNCSNEILSISAMLSVPNCFVRPREAQK
AADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRIM
VRYNLKLCSTEFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLD
HKPEWVIYNEFVLTSRNFIRTVTDVRGEWLVDIAPHYFDLANFPPCEAKRVLERLYKKRE
KEREETKNNK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagaggaagaggaaggtgagcttgttcgatgtggtggacgacacctcggcc
gcggcggccaaactggcgaaatccaacggcggcgtagttcacgggaacagcaactcgacg
gcggctctgatcaaccggtggaatgggaggccgtactcgcagaggtattacgatatattg
gagaagaggaagaccctgcctgtatggcaccagaaagatgagttcttcgaagtcttgaaa
tcgaaccagaccttaatcttggttggtgaaactggtagcggcaaaaccactcagattccc
cagtttgtcctggaagctgttgatttagagaccccagataagcgcaagaaatttatgatc
ggatgcacccagcctcgaagggtggctgctatgtctgtttctcgtcgggttgccgaagag
atggatgttactattggagaagaagttggatatagcattcgttttgaagactgcagtagc
gcaagaacagttttgaagtatttaacagatggtatgctattaagagaagctatgacggac
ccgcttttagaaaggtacaaagttataattcttgatgaggctcatgaaagaactttggca
acagatgttttatttgggcttctgaaggaagtgctgaaaaatagacccgatctcaagtta
gttgtgatgagtgctactcttgaggctgaaaagtttcagggttatttctatggtgcacct
cttatgaaagttccaggaaggcttcatcctgtggagattttatacacccaggatcctgag
agggactaccttgaagcagcacttcgtacagtcggtcagatacacatgtacgaacctcct
ggtgacatacttgtatttcttactggagaagaggagatagaagaagcatgtcggaaaata
tcaaaagaagtagcaaatatgggagataacgtgggtcctgtgaaagctgttcccctgtat
tctacactacctccagctatgcagcagaagatatttgaacctgctcctcctcccctgaca
gagggcggtcctcctgggaggaagattgtagtgtctacaaacattgcagaaacttctttg
accatagatggtatagtttatgtgatagaccctgggtttgccaaacaaaaagtctataac
cctcgaatacgtgttgaatctttattagtctctcctatatcaaaggctagtgctcaccaa
agagcggggcgtgctggaagaacacaaccaggaaaatgttatcgactctatactgagaaa
agtttcaataatgatcttcagtcacagacctacccagaaatattgcgatcaaaccttgct
aatacggttctcaccttgaagaagctagggatagatgatctggtccattttgattttatg
gacccccctgcacccgagacactgatgcgcgcgttagaggtcttgaattacttaggagca
ttggacgatgaaggaaacttgaccaagctgggtgagatcatgagtgaagtccctttggat
ccacagatggcaaagatgcttgttgtcagccccaaatttaactgttcaaatgagattctg
tccatatcagccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaa
gctgcagatgaagcaaaagctcggtttggacacattgatggggaccacctcacgctcttg
aatgtataccatgcctacaagcaaaacaatgaggatccatcttggtgttacgagaacttt
gtcaatcaacgggcattaaaatctgccgataatgtcagacaacagctggttcggattatg
gttaggtacaacctgaagctttgcagcacagaatttaacagccgggactactacatcaac
atcagaaaggctatgctagctggatatttcatgcaagtggctcatctggagcgcactgga
cattatttgactgtgaaggacaaccaagtggttcacttgcacccttcaaattgcctagat
cataaaccagaatgggtcatctataacgagtttgttttaacaagcagaaacttcatccgt
acagtaacagatgttcgtggcgaatggttggttgatatagcaccccactacttcgacctt
gcaaactttccgccgtgtgaagcaaagcgtgttcttgaaaggctttacaagaaacgagaa
aaggagagggaagaaaccaagaataataagtaa
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