Actinidia eriantha (wild kiwifruit): 130756290
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Entry
130756290 CDS
T09464
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130756290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130756290
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130756290
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130756290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
Sigma54_activ_2
GIPC1_GH2
AAA_16
ABC_tran
Flavi_DEAD
TsaE
PhoH
Motif
Other DBs
NCBI-GeneID:
130756290
NCBI-ProteinID:
XP_057466767
LinkDB
All DBs
Position
20:complement(19402042..19409293)
Genome browser
AA seq
1246 aa
AA seq
DB search
MASETKEDGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEMGRKCETVEDFDSQLKE
NGAEMPDYFVRTLLTIIHAILPPKPKSKSGKEGKKDGSEGKKSSFPALEIEDSRERVKEI
EREIEMETKDWGRGDEEEGEHMKHRDRDSNRGRDRGDRDRDGRERHRERDRDDRGHRRDG
HRDREEEDRSRGRHKDRHDRHRRDGYEEDGDNKEDEEDRSRGRHKDRHDRHRRDGYEEDG
DNREDKEDRSRGRHKDRHDSHRRDGYEDGENKEDDDRRDQRNGRYQSDELELYQVYKGRV
SRVMDTGCFVQLSDFRGKEGLVHVSQIATRRIANVKDVVKRDQEVYVKVISVSGQKLSLS
MRDVDQHTGKDLLPLKRSSDDDTFRTNPSGSNNGGPTSRTGLSGIRITEDDDVVPSRRPL
KRMSSPEKWEAKQLIAAGVLDVREHPMYDDEGDGMLYQEEGGEEELEVELNEDEPAFLQG
QSRYSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWED
PMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRKSLPIFKLKN
ELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAE
EFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLMREILIDENLTQYSVIMLDEAHERTI
HTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQP
ESDYLDASLITVMQIHLTEPEGDILLFLTGQEEIDHACQCLYERMKGLGKNVPELIILPV
YSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLD
SLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPTSIPEIQRINLGTVTLNM
KAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKM
LLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAW
KAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVMSAGKNFTKIRKAITAGFF
FHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKW
LVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgagaccaaggaagatggtttgaagaaactagagtacctttcattggtctca
aaggtttgcacagaactcgagtcgcatctggggtttggggacaaggttttggccgaattc
attaccgagatggggaggaagtgcgagacggtggaggatttcgattcgcagctgaaggaa
aacggtgctgaaatgcccgattacttcgtccgaaccctcttaactataattcacgcgatc
ttgcctccaaaaccaaagtcgaaatcggggaaagaagggaagaaagacgggtctgaaggg
aagaaatcaagttttccggctctggagattgaggacagtagagagagagtgaaggagata
gagagagaaatcgagatggaaacgaaggattgggggcgaggtgatgaggaagaaggggaa
catatgaagcacagggacagagacagcaatagaggtagagacagaggtgatagagataga
gatgggagagagaggcatagggagagagatagagatgacaggggtcatagacgcgatggt
catagagaccgggaggaagaggatagaagtagaggaaggcacaaggataggcatgacagg
cataggagagatgggtatgaagaagatggggataacaaggaggacgaagaggatagaagt
agaggaaggcacaaggataggcatgacaggcacaggagagatgggtatgaagaagatggg
gataacagggaggacaaagaggatagaagtaggggaaggcataaggatagacatgacagt
cataggagagatgggtatgaagatggggaaaacaaagaggacgatgataggagggaccaa
agaaatggtaggtatcaatcggatgagctcgaattatatcaggtttataagggcagagtg
tccagagtgatggatactggttgctttgttcagctttctgattttaggggcaaagaggga
ctggtccatgtttcacagattgcaactcgaagaattgctaatgtaaaggatgttgtgaaa
cgggatcaggaggtttatgtgaaagtaatctcagtatcaggtcagaagctgagtttatca
atgagagatgttgatcagcatactggtaaagatttgcttccattgaaaaggagctcagat
gatgatacttttcggactaatccttcgggatcaaacaatgggggccctacatccaggacg
ggtctttcagggattagaatcactgaagacgatgatgttgtaccctcacgccggccactg
aagagaatgagttcaccggagaaatgggaagctaaacagttgattgctgcaggtgttctg
gatgtgagggagcatcccatgtatgatgacgaaggcgatgggatgctctatcaagaagag
ggtggtgaggaagagcttgaagttgagctcaatgaagacgaaccagctttcttgcaagga
cagagcagatactctatagacatgtcacctgttaagattttcaagaatcccgaagggtcc
ttgagtcgtgcagcagcgcttcagtctgctctcataaaggagcggagagaagtaagggaa
cagcagcaaagaacaatgcttgattcgatcccaaaagatctgaatcgtccgtgggaagac
ccaatgcccgagacaggtgagaggcatcttgcccaagaacttagaggagttgggttatca
gcttatgacatgcctgagtggaaaaaggatgcttttgggaaagccctaacttttggtcag
agatcgaagctttccatccaggaacagagaaagagcttgcccattttcaaattgaagaat
gaattggttcaggctgtgcatgataatcaggttttagtggtaattggcgagacaggttca
gggaagactacacaagttacacagtatctagctgaagcagggtacacaaccaaaggaaag
attggctgtactcagccccgtagggtggctgcaatgtcagtggccaagagggttgccgaa
gagtttggctgccgattaggagaggaagttgggtatgccattcgttttgaggattgtaca
ggaccggatacggtgatcaagtatatgactgatggtatgcttatgagagaaattcttatt
gatgagaatttaactcagtattcagttattatgcttgatgaagctcatgagaggacaatt
cacactgatgtccttttcggactgctgaagcagctggtgaagaggagacctgaccttcgt
ttgattgtcacatctgccacattagatgcagagaaattttctggatatttctttaactgc
aatatctttacaattcctggaagaacttttcccgtggagatactctacaccaaacagcca
gaaagcgactatctagatgcatctctaatcactgttatgcagatccacctgacagaacct
gagggtgacatccttctcttcttgactggtcaggaggagattgatcatgcatgccaatgt
ctttatgagaggatgaaaggtttaggtaaaaatgttcctgaattaattattttaccagtt
tacagtgcactcccgagtgaaatgcaatccaggatctttgatcctgcccctccagggaag
aggaaagtggttgtagcaaccaatattgcagaagcatcattgaccattgatggaatattt
tatgtgatagaccctgggtttgcaaagcaaaatgtttacaatcctaaacaagggcttgat
tcacttgtcataactcctatttcacaagcgtcagccaagcagcgagctgggcgtgctgga
cgaactgggccaggaaaatgttatcgcctttacactgagagtgcctttcataatgaaatg
tcacccacttcaattccagaaatacaacgtattaaccttgggacggttacgcttaatatg
aaagctatgggaataaatgatcttctatcttttgatttcatggacccaccttctcctcaa
gctcttatttctgccatggaacagctgtacagtctaggagctctggatgaggaggggctt
ctgaccaaattgggtaggaaaatggcagaatttccactggatccacccttatctaagatg
ctacttgccagtgtagatcttggatgcagtgacgagatcttaacaatcattgcaatgatt
cagactggaaacatcttctaccggcccagggagaagcaggcccaagcagatcaaaaaaga
gccaagtttttccagcccgagggagaccatctgactttacttgctgtttacgaggcttgg
aaggccaagaacttttctggtccttggtgttttgagaactttgttcagtctcggtcattg
aggagggcgcaggatgtccggaaacagcttctcaccataatggacaagtataaattggat
gttatgagtgctggaaaaaatttcacgaaaatcagaaaggccatcactgcaggcttcttt
ttccacgctgctaggaaagacccgcaagaagggtaccgaaccttggtggaaaaccaaccg
gtgtacatacacccgagcagtgccttgtttcagagacagccagactgggtgatctaccac
gagttggtaatgactacaaaggagtacatgcgggaggtcacagttgtcgaccctaaatgg
ctcgttgaactggcaccaagattcttcaaagtatcagatcccacaaaaatgagcaagcgc
aagcgacaagaacgaattgaaccactttatgaccgataccacgaacccaattcgtggcgt
ttgagtaaaagacgtgcttaa
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