Actinidia eriantha (wild kiwifruit): 130758337
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Entry
130758337 CDS
T09464
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130758337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130758337
03019 Messenger RNA biogenesis [BR:
aew03019
]
130758337
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130758337
RNA polymerase I system
130758337
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
130758337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW4_SPT5
Spt5-NGN
KOW
KOW6_SPT51-2
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
130758337
NCBI-ProteinID:
XP_057469185
LinkDB
All DBs
Position
21:complement(8814437..8823126)
Genome browser
AA seq
1041 aa
AA seq
DB search
MRHRRRDDEDELEPEEDEDEEETLDEEEEEDDDMGGGRGGRKRRRSQFIDDVADEDDEEE
EDDEDDDDFGGGGRRGGRREKRRSAADFFDDIAAVATDDEEEIEDGDDDFIVEPGADLQD
EDDGRRIHRRPLLSRDDEQEDVEALERSIQARYARSNHTEYDEETTDVEQQSLLPSVRDP
KLWMVKCAIGREREAAVCLMQKSLDKGSELQIRSAIALDHLKNYIYVEADKEAHVKQACN
GLRVIYTNTKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQ
RVTVKLIPRIDLQAIANKLEGKDAPTKKAFVPPPRFMNVDEAREMHIRVERRRDPMTGDY
YENINGMMFKDGFLYKTVSMKSISTQNIQPTFDELEKFRQPDENGDGDIAGLSTLFANRK
KGHFMKGDQVIVVKGDLKNLKGWVEKVEEDNVHIRPNAEGLPKTLAVHEKELCKYFEPGN
HVKVVSGASEGATGMVIKVEGHVVIILSDTTKEHIRVFADNVVESSEVTTGVTRIGDYEL
HDLVMLDNTSFGVIIRVETEAFQVLKGVPERPEVALIRLREIKSKVDRSTVAQDRSKNTV
SVKDVVKILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCIVVGGSRVNGD
RNGGSLASRYAHLRSPALVPQSPGRLPRGPPMESIGRHRGGRGHDPLVGTTVKVRQGPFK
GYRGRVVDVKGLSVRVELESQMKVVTVGRHHISDNVVVSTPYRGTSRYGSGSETPMHPSR
TPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDSWEDGNPGSWATSPQYQP
GSPPSRTYEAPTPGSGWANTPGGNYSEAGTPRDGSHAYANAPSPYLPSTPGGQPMTPSSG
LYLPGTPGGQPMTPGSGGLDIMSPVVGGNNEGLWVLSDILVNVRRSGEGTAIGVVREVLP
DGSCIINLGSNGNGERVTALPGEVEIVAPRKSDKIKIMGGSQRGQTGRLIGIDGSDGIVK
VDEYLDVKILDMNILAKLVQS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaccggaggcgagacgacgaggacgagctggagccggaggaagacgaagacgaa
gaggagactcttgatgaggaggaagaggaggatgacgatatgggagggggtcgtggaggc
cgcaagaggaggagatctcagttcatagacgacgtggccgatgaggacgatgaggaggaa
gaagacgatgaggatgatgatgatttcggcggcggaggtcgtcgcggtggtcgccgcgag
aagaggcggtctgcggccgatttttttgacgatatcgcggcggtggcaaccgacgacgaa
gaggagattgaggacggcgatgacgatttcatagtagaacctggagctgatctgcaagat
gaagatgacggtagaagaattcatcgccgtccattgctgtcaagggatgatgaacaagaa
gacgttgaagctcttgagagaagtatccaggcaagatatgccagatcgaatcacacagaa
tacgatgaggagacaacagatgtagaacaacaatctcttttgccatcagttagggatccg
aagctgtggatggtgaaatgtgcgattggccgtgagcgggaggcagctgtttgcctaatg
caaaagtctcttgataaaggatctgagttgcaaattagatcggctatagctcttgatcat
ctaaagaattatatttatgttgaggcagacaaagaagctcatgtgaagcaggcttgcaat
ggtttgcgcgtaatttatacgaatactaaaataacactcgttccaatcaaagaaatgact
gatgttctttcggtggaaagcaaagcaattgatctttccagggatacttgggtcagaatg
aagattggaacgtataaaggggaccttgcaaaagtggttgatgtggataatgtgcggcag
agagttacagtgaaattaatcccacgtattgacttacaggccatcgcaaataagttggaa
ggtaaggatgccccaacgaaaaaggcatttgttcctcctccacgttttatgaacgttgac
gaagccagagaaatgcatattcgtgtggagcgtagacgagacccaatgactggagattac
tatgagaacataaatggcatgatgttcaaggacggtttcttatataaaactgtatccatg
aaatcaatcagcactcaaaacatacaaccaactttcgatgagctagagaaatttcggcaa
cctgatgaaaatggtgatggagatatagctggtctgtcaactttgtttgcaaacagaaag
aaaggtcattttatgaaaggagatcaagttattgttgtcaagggggatctcaaaaatttg
aagggatgggttgagaaagttgaggaagacaatgtccatatcagaccaaatgcagagggt
ctccctaaaactcttgctgtacatgaaaaggagctttgcaagtacttcgaaccagggaat
catgtgaaggttgtctctggtgcatcagaaggtgcaactggtatggttataaaggttgag
gggcatgtagttatcatcttgtctgacacgactaaggaacatatacgtgtgtttgccgat
aatgttgtagagagctcagaggtaactactggtgttaccagaattggggactatgagctg
cacgatcttgtgatgctggataatacgagctttggggtaatcatacgtgtagaaactgaa
gctttccaggttctgaagggagtcccggagagacctgaagttgctcttatcagactgcga
gagatcaaatccaaggttgacagaagtactgttgctcaagatcggtccaaaaacacagta
tcagtgaaagatgttgttaagattcttgaaggcccgtgcaaaggaaaacaaggtccagtt
gaacatatttatagaggaattctgtttatttacgatcgtcatcatcttgagcatgcgggc
ttcatatgtgctaaatctcagtcttgcatagtagttggtggatctcgtgtgaacggcgat
agaaatggtggttcattggcttcaaggtacgctcatcttaggtctccagctcttgttcct
cagtctcctgggagattgcctagaggccctccaatggaatctataggaaggcatagaggt
ggtagaggacatgatccattggttggtaccacagtaaaagttcgccagggtcctttcaag
ggttatcgaggacgtgttgttgatgttaaaggtttatcagtcagagttgagttggagtca
cagatgaaagttgttacagttggtcgtcatcatatttccgataacgtggtcgtatcaact
ccttatcgtggcacgtctcgatatggttcaggcagtgagacccccatgcatccttcacga
actccattacatccgtatatgactccgatgagagatccgggagcaacacctattcatgat
ggcatgaggacacctatgcgtgaccgagcatggaatccgtacacacccatgagtccacca
agggatagttgggaggatggaaaccctggttcatgggcgacaagtccgcagtatcagccg
ggaagtcctccttcaagaacatatgaggctcctactcctggttccggttgggccaacact
ccgggtggcaattacagtgaagctggaacaccaagggatggcagtcatgcctatgcaaat
gccccaagcccttatctgccatctactcctggtggacagccgatgacgccaagttcaggt
ttataccttcctggcactcctggagggcaaccaatgacaccaggaagtggtggtttggat
attatgtctcctgtagtaggtgggaacaatgaaggactttgggtactttcggacatattg
gtcaatgtgcgcaggtctggtgaaggcactgccattggagttgttcgagaggttctcccg
gatggttcgtgtattataaatttgggatcgaatggcaatggggaaagagtaactgccctc
cccggtgaagtagagatagtggcaccgaggaaatcggacaaaattaagataatgggcggt
tcacaacgtggtcaaacaggaaggctgatcggtattgatggtagtgatggaattgtcaag
gtagacgaatatcttgatgttaagatattagacatgaacattctggccaaactagtacaa
tcttga
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