Actinidia eriantha (wild kiwifruit): 130760339
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Entry
130760339 CDS
T09464
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130760339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130760339
03019 Messenger RNA biogenesis [BR:
aew03019
]
130760339
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130760339
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130760339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_4
zf-CCCH_RBM22
Motif
Other DBs
NCBI-GeneID:
130760339
NCBI-ProteinID:
XP_057471592
LinkDB
All DBs
Position
22:19852103..19868539
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AA seq
683 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDAGPTNPTASVPSVQSESVATAAAAAAEPVAINPAGRRSFRQTV
CRHWLRGLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHSNEDIKECNMYKL
GFCPNGPDCRYRHAKLPGPPPPVEEILQKIQQMTSYNYGNSNRFFQNRNGNYSQQTEKSQ
FPRGPTNANQGTAANSSTTESLNMEPQQQVQQSQQQVGQTQIQNLPNGQQNQGNSTATPL
PQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQ
GCAKMTSKIVGSVGGGNWKYEHGTAHYGRNFSVKWLKLCELSFHKTRYLRNPFNENLPVK
ISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPENGTANPDIVP
FEDNEEEEDEDEESEEDESYGQAFGAAAQGRGRGRGMMWPPHMPFARGARPFPGMRGFPP
VMDGFSYGAVTPDGFPVPDVFGVGPRPFPPYGPRFPGDFAGPASGMMFHGRPPGGGFGMM
MGPGRTTFMGGMGIGAAAAQPRAGRPIGLPPVFPPPSQPTQLSNHPLKRDHRETTYDKND
RYSAGSDRGGKEMAGSGVDDEIQHGKGVTTQQEDQFGAGNSLRNDESESEDEAPRRSRHR
EGKMRRHSSEVNATSGSSQQVQC
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgaaggaggtctgagcttcgatttcgagggcggtctcgacgcggggccc
acgaaccctacggcgtccgtaccttcagtccaatctgaatccgtcgcgaccgccgctgca
gcggccgccgagcccgtggccatcaaccccgcggggcggcggagcttccggcagacggtg
tgccggcactggctgcggggcctgtgcatgaagggcgacgcgtgcgggttcctccaccag
tacgacaagtcgcggatgccaatatgccgcttcttccggttgtacggggagtgccgcgag
caagattgcgtctacaagcactccaatgaggacatcaaggagtgtaacatgtataagttg
ggattttgtcccaatggtcctgattgccgctataggcatgcaaagctgcctggccctcca
cctcctgtagaagaaatccttcagaagattcagcaaatgacttcttacaattatggcaac
tcgaacaggttctttcaaaatcgaaatggtaattattctcaacaaacagaaaaatctcag
tttccacgaggcccaactaatgccaatcaaggcacagctgcaaattcttcaacaacagag
tctctcaatatggagccacagcaacaagttcaacagtctcaacaacaggtcggacagacc
caaatacaaaatcttccaaatggccagcaaaatcaggggaatagcactgctacaccactg
cctcaaggaatatctaggtattttattgtcaaaagttgcaatcgtgaaaatttggaatta
tcggtacaacaaggagtatgggcaactcaaaggagcaatgaggctaaactgaatgaagct
tttgactctgtggagaatgttatcttgatcttttcagtcaaccggacccggcatttccag
ggttgtgcaaaaatgacttctaaaattgttggctctgttggtggagggaactggaagtat
gagcatggaaccgcacattatgggaggaatttctctgtcaaatggttaaagctatgtgaa
ttatcttttcacaaaactcgttatttgaggaacccgtttaacgagaacctaccagtgaag
attagcagagattgccaggagctagagccttctataggtgagcagttggcttcgctgctc
taccttgagcccgacagtgaactcatggcaatctcagttgcagcagaatcaaagcgagag
gaggaaaaagcaaagggagtgaatccggaaaatggtactgcgaaccctgatattgtccca
tttgaggacaacgaagaagaggaagacgaagacgaagaaagtgaggaggacgagagctat
ggccaagcttttggggcagcggctcaaggaagaggaaggggaaggggaatgatgtggcct
cctcacatgccttttgcacgtggagccaggccattcccggggatgcgaggctttccccca
gttatggatggattttcttatggagccgtcacacccgatggttttccggtgcctgatgtt
tttggtgtgggtcctcgcccttttcctccatatggtccaagattccccggtgattttgct
ggtcccgcatctggcatgatgtttcacggccgaccacccggtggtggatttgggatgatg
atgggtcctggacgaacaacttttatgggtgggatgggcattggagctgctgcagcccaa
ccaagagctggtcggccgattggtttgccgccagtgtttccaccaccatcacagcccacg
cagctctcaaaccatccacttaagagggaccatagagaaacaacttatgataagaatgac
agatacagcgcaggttcagatcgcggcggcaaggaaatggctggatcgggagtagatgat
gagatacagcacgggaaaggagtaacgactcaacaagaggatcaatttggtgccggaaac
agcttgaggaatgatgagagcgaaagcgaggatgaggcgccaagaaggtcaagacacagg
gaggggaagatgagacggcatagttcagaggtgaatgctaccagtggctccagtcaacaa
gtccagtgttaa
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