Actinidia eriantha (wild kiwifruit): 130762204
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Entry
130762204 CDS
T09464
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130762204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130762204
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130762204
Spliceosome [BR:
aew03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130762204
Complex C
U4/U6.U5 tri-SnRNP related factors
130762204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
T2SSE
nSTAND3
SRP54
AAA_16
PWI
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
130762204
NCBI-ProteinID:
XP_057473852
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All DBs
Position
23:complement(17838889..17857538)
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AA seq
1053 aa
AA seq
DB search
MGDLKAWVSDKLMLLLGYSRPTVVQYVIGLSRTTSSPSDFLGKLVDIGLSATSETRAFAE
EIFAKVPRKASGINLYQRQEREAALLVKKQKTYALLEADDDDHDVGGSSGNGSYVPAASP
PRKDDTRKKRFRKKADNQEDEDDEVVVNREEERRVKRRTSQNEDDDSESDEERLRDQRER
EELERKMKERDASATRKLTEPKPTKREEEEAVRRSNALEEDGIDTLRKVSRQEYLKKREQ
KKLEELRDDIEDEQYLFDGVKLTEAEYREMRYKKEIYNLVKKRSEEADNIDEYRMPEAYD
EDGGVNQEKRFAVALQRYRDTSGGEKMNPFAEQEAWEEHQIGKATLKFGSKNRKQNSEDY
QFVFEDQIDFIKASVMDGVNFEEELPTEDLEESMAKSAFEKLQEDRKTLPMYPYRDELLQ
AVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDI
LFGLVKDITRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEADY
LDAAVVTALQIHVTQQPGDGDILVFLTGQEEIETAEEILKHRTRGLGTKIPELIICPIYA
NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESL
LVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTVPEIQRTNLANVVLSLKS
LGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIV
ASEKYQCSDEVVSIAAMLSVGGSIFYRPKDKQVHADTARMNFHTGNVGDHTALLKIYSSW
KETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNSNDLDAIKKAITAGFF
PHSAKLQKNGSYRTVKYPQTVYIHPSSGLAQILPRWVVYHELVLTTKEYMRQVTELKPDW
LVEIAPHYYQLKDVTDSVSKKMPRGAGRASEVN
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatttgaaggcatgggtctcggacaagctgatgttgctcctgggatactcgcga
cctactgtagttcaatatgtgattggtttatcaaggactacctcatcgccctctgacttt
ttgggtaagcttgtggatattgggttatcagccactagtgaaacacgtgccttcgcagaa
gagatttttgcaaaggttccgcgcaaagcgtcggggattaatctttatcagagacaagaa
cgggaggcagctttactggttaagaagcagaagacctatgctcttttggaggctgatgat
gacgaccatgatgttggtggtagcagtggaaatggttcttatgttcctgcagcttctccg
ccaagaaaagacgacactcgtaagaaacgtttcaggaagaaggctgataatcaggaagat
gaagatgacgaggtagttgtgaacagggaagaggaaagacgagttaaaagacgaacttct
cagaatgaagatgatgattccgagtcagatgaagaaagattgcgtgaccaaagagagagg
gaggagctagaacgcaaaatgaaagaacgagatgcatcagcaacaaggaagctaactgag
ccaaaaccaacaaagagggaggaagaagaagctgttcggaggtctaatgcgttggaggaa
gatggcattgatactttaagaaaagtttcaaggcaagagtatttgaagaaacgggagcaa
aagaaattggaggaactcagagatgacatagaagatgagcagtatctttttgatggtgta
aaattgactgaagcagaataccgtgagatgagatacaagaaagaaatttacaatcttgtt
aagaagcggtccgaagaggctgataatatagatgagtataggatgcctgaagcttacgat
gaggatgggggtgtaaatcaggagaagcgatttgctgttgctttgcagcgttacagggac
acaagtggtggagagaaaatgaacccatttgcagagcaagaagcatgggaggagcatcag
attggaaaggcaactcttaaatttggttcgaaaaataggaagcaaaactctgaagattat
cagtttgtgtttgaggaccagattgatttcataaaggcatcagtgatggatggtgtcaat
tttgaagaagagcttcccactgaggacctcgaggaatctatggcaaaatcagcatttgag
aaacttcaggaggacagaaaaactttgcctatgtatccataccgagatgagttgctccaa
gctgttcatgatcatcaggttcttgtcattgttggagagacaggctcgggaaaaactact
cagataccacagtatcttcacgaggctggatatacaaagcgtggaatgattggatgtacc
cagccacggcgtgttgctgctatgagcgttgctgctagagtttctcaagaaatgggtgtc
aaactcggccacgaggttggttactcgattcgttttgaagattgcacttcagaaaagact
attctgaaatatatgactgacggtatgctccttcgggaattccttggtgaacctgatctt
gcaagttacagcgtggtgatggtggatgaggcccatgaaagaactctctcaaccgacatt
ttgtttggtttagttaaggatattactcggtttcgtcctgatctcaagttgcttatctca
agtgcaacgcttgatgcagagaagttcagtgattattttgattctgctccaatttttaaa
atccccggcaggcggtttcctgttgaaatacactacacaaaagcaccagaggctgattac
ttggatgcagctgttgtcaccgctcttcagatccatgttactcaacaacctggtgatggg
gatatattggtgttcctcactgggcaggaggaaattgaaacagcggaggagatactgaaa
catagaacaaggggacttggaactaaaattccggagctcatcatatgccctatctacgca
aacctcccaactgagttgcaggcaaaaatatttgaacccactcctgaaggggcacgtaag
gttgtccttgccacaaatatagcagaaacgtcgttgacaattgatgggattaagtatgtc
attgatccaggattttgcaagatgaaatcctataatccccgtactggcatggagtcatta
ttggtcactcccatctccaaagcatcggcaaatcagcgagctggtcgatctggacgtaca
ggtcctgggaagtgctttcggttgtataccgcttacaactattacaatgatttggacgac
aatactgtcccagagatacaacggactaaccttgccaatgttgttctttctcttaagagc
cttggcattcacgacctgttgaattttgattttatggacccaccacccgctgaagcattg
cttaaagccttggaactgctctttgctttgagtgcattaaataagttaggagagttgacg
aaagtaggtagaagaatggcagagtttcctcttgatcccatgttatctaaaatgattgta
gcatcagagaaataccaatgctcagatgaagttgtatcaatcgctgccatgctctctgtt
ggaggctcaattttttatcgaccaaaggacaaacaagtccatgctgacactgcgcgaatg
aattttcacactggaaatgttggagatcatactgcattgcttaagatctacagttcctgg
aaagaaaccaactactcaacgcaatggtgctacgagaattacatccaggttaggagtatg
aaacgtgcaagagacataagagatcaattagaggggctgttggaaagagttgaaattgaa
ctgacatcaaactccaatgacttagatgctataaaaaaggccataaccgcaggttttttc
cctcactctgcgaaactgcagaagaatggatcttatcggacggtcaaatatcctcagact
gtttatattcacccttcttctggtctagcacagatactcccacgatgggttgtttaccat
gaattagtgctgacaaccaaggagtacatgcggcaggttactgaactaaagcccgactgg
ttggtggaaatagctcctcactattatcaattgaaggatgtaactgattctgtatcaaag
aaaatgcctcgtggagcaggacgagcatctgaggtgaactaa
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