Actinidia eriantha (wild kiwifruit): 130762741
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Entry
130762741 CDS
T09464
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130762741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130762741
03009 Ribosome biogenesis [BR:
aew03009
]
130762741
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130762741
Spliceosome [BR:
aew03041
]
Complex A
U2 snRNP components
U2 related factors
130762741
Complex B
130762741
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130762741
Ribosome biogenesis [BR:
aew03009
]
Eukaryotic type
90S particles
Helicases
130762741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
T2SSE
SRP54
AAA_7
AAA_30
NACHT
FtsK_SpoIIIE
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
130762741
NCBI-ProteinID:
XP_057474549
LinkDB
All DBs
Position
23:complement(66622..73090)
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVTLFDVVDDTSVSAKLSKSNGGLLNVTTNMNPLLNRWNGRPYSQRYYEILEK
RKTLPVWHQKEDFLQILKANQTLILVGETGSGKTTQIPQFVLEAIDLEIPDKQRKFMIGC
TQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRLDLKLVVMSATLEAEKFQGYFSDAPLM
KVPGRLHPVEIFYTQEPEKDYLETAIRTVLQIHMYEARGDILVFLTGEEEIEDACKKISK
EVVNQGDNCGPVKVVPLYSTLPPAMQQKIFEPAPPPLTEGGQPGRKIVVSTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NNDLQPQTYPELLRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTKLGQIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFLRPREAQKAA
DEAKAKFAHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINHRAMKSADNVRQQLVRIMVR
FNLKLCSTEFNSRDYYTNIRKAMLAGYFMQVAHLERTGHYLTVKDKQVVHLHPSNCLGHK
PDWVIYNEFVLTTRNFIRTVTDVSGEWLVDIAPHYFDLANFPACEAKRVLEKLYKKREKE
REEGKNKK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagagaaagaggaaggtgaccttgttcgatgtggtggatgacacctctgtc
tccgccaaactctccaaatcgaacggcggcttacttaacgtcaccaccaacatgaatcct
ctgctcaatcggtggaatgggcggccttattcgcagaggtattacgagattttggagaag
aggaagaccttgcctgtttggcaccagaaagaagatttcttacaaatcttgaaggccaat
caaaccctaatcttggttggtgaaaccggaagtggtaaaacaactcagattcctcagttt
gttctggaagccattgatctggagatcccagacaagcaaaggaaattcatgattggctgc
acccagcctcgcagggtggctgcaatgtctgtttcccgtcgggttgctgaagagatggat
gtaaatattggagaagaagttggttatagcattcgttttgaagactgcagcagtgcgaaa
acagttttgaagtatttaacagatggtatgcttttaagagaagctatgactgatccactt
ttggaacgttataaagtcataattcttgatgaggctcacgagagaactttggcaacagat
gttttatttgggcttctaaaggaagtactgaaaaatagactagatttgaaactagttgta
atgagtgctactcttgaagccgaaaagtttcagggttatttcagtgatgcacctcttatg
aaagttccaggaaggcttcatcctgtggagatcttttacacacaagagcctgagaaagac
taccttgagactgcaattcgtacggttcttcaaatacacatgtacgaagcacgtggtgac
atacttgtatttcttactggagaggaggaaatagaagatgcgtgtaagaaaatatcgaaa
gaagttgtaaatcagggagataactgtgggcccgtgaaagtagtaccactgtattctaca
cttcctccagcaatgcagcagaagatatttgaacctgctcctccaccccttactgagggc
ggtcaacctgggaggaagattgtagtgtcaacaaacattgcagaaacctctctgaccatt
gatggtatcgtttatgtgatagaccctgggtttgcaaaacaaaaagtctacaaccctcga
atacgtgttgaatctttattggtctctccaatatcaaaggctagcgctcaccaaagatca
ggacgtgctggaagaactcagccaggcaaatgttttagactttacactgagaaaagcttc
aataatgatcttcagccgcagacctacccagaactactgcgatcaaaccttgctaacaca
gttcttacgttgaagaaacttgggatagatgatcttgtccattttgattttatggatccc
cctgccccagagacattaatgcgcgcattagaagttttgaattacttgggagcattagat
gatgagggaaacttgaccaagctgggtcagataatgagtgaatttcccttagatccacag
atgggaaagatgcttgttgtcagccctgaatttaactgttcaaatgagattctgtctatc
tctgcgatgctttcagtacccaattgctttctccggcctagggaggctcaaaaagctgca
gacgaagcaaaagcaaaatttgcacacattgacggggatcaccttacactcttgaatgta
taccatgcctacaagcaaaataatgaggatccatcttggtgttacgaaaacttcatcaat
catagggcaatgaaatctgctgataacgtgaggcaacaactcgttcggatcatggttaga
ttcaacctcaagctatgcagcacagagtttaacagtcgtgactactacacgaacatcaga
aaggctatgctagctggatatttcatgcaggtggctcatctggagcgcactggccactat
ttgactgtgaaggacaagcaggtggttcacttgcacccttcaaattgcctgggtcataag
ccagattgggtcatctacaatgagtttgtcttaacgaccagaaatttcatccgcacagtc
acagatgttagtggtgaatggttagttgatattgcaccgcactactttgatcttgcaaac
tttccggcatgcgaagcaaagcgtgttcttgaaaagctttacaagaaacgggaaaaggag
agggaagagggcaagaacaaaaagtag
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