Actinidia eriantha (wild kiwifruit): 130764149
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Entry
130764149 CDS
T09464
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03013
Nucleocytoplasmic transport
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130764149
03015 mRNA surveillance pathway
130764149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130764149
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130764149
5.6.2.5 RNA 5'-3' helicase
130764149
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130764149
mRNA cycle factors
Common to processing body (P body) and stress granule
130764149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
nSTAND3
NPHP3_N
SRP54
ATPase
AAA_16
PhoH
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
130764149
NCBI-ProteinID:
XP_057476213
LinkDB
All DBs
Position
24:complement(17965101..17986078)
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AA seq
1263 aa
AA seq
DB search
MDSQGSNLFETASQPDTGNDAYTFLEFNTHGEDFDYPEFQELSQPIRSSAAWPPTPSDSV
PDAEDRTTSADASPVLATKGRGSGGGGGGGSNQAAAVDALAAGMSGLNFEETGDDESYEF
GKRDFAEHACRYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCREPCLNVNALKDMNWDLSQWCP
LIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRIAYFVFPKED
NELRLVPGDELRLRYSGDAAHPAWQTVGHVIKLTAQEEVALELRASQGVPVDVNYGFSVD
FVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAAGLPELN
ASQIFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRISAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQSTEPECLIPL
VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSE
FPSNSFYEGTLQNGVTINERQSPGTDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
SNVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQQLWNGLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPDTFGSVPSSSPNSDR
RNSRSRGSYMPSGPPNGTHKPGVHPTGYPMPRVPLPPYHGALPSQPYAIPTRGAVHGPVG
AVPHVPQPGNRGFGAGRGSTGTPIGSHLPHQQGSQQPIGNLESTFNFPPLENLNSQPSVG
GPLSQPGFVSNMTVQGPNQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADFSSQASQG
GYGVDYVTQGVQGGFPGSFVNHNSQAGYSRFGAGNDFMSQDYMAHGSQGLFTQVGFNDPS
QDDASQSHFGMANANPLHSQGLMNPLYSQPFAHYNTQSLNLKATQQQPQQDQNSQNQILH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaggggagcaacctcttcgaaacggcgtcacagccggatactggcaacgac
gcctacaccttccttgaattcaacactcacggcgaggacttcgattaccctgaatttcag
gagctttcgcagccaattcgttcctcggcggcgtggccgcccacgccctcggattccgtg
ccggacgcagaggatcgtactacctcggccgacgcttccccagtcttggccacgaagggg
aggggaagtggcggcggcggcggtggtgggagcaatcaggcggcggccgtggatgctctt
gcggcggggatgagcggtttgaacttcgaagagactggggatgatgagagttacgagttc
ggcaagagggatttcgcggaacatgcgtgtaggtactgtggggtgacgaacccggcgtgc
gtggtgaggtgcaatgtgccgtcatgtcgcaagtggttctgcaattcgcgggggaatact
tctgggtctcatatagttaaccatctggttcgggctaagcacaaagaagtttgtcttcat
aaagatagtcccttgggagaaacaatccttgaatgttacaattgtggatgccgaaatgtg
ttccttcttggatttatctctgctaagacggacagtgttgttgttcttctttgcagggag
ccttgtctcaatgtcaatgcattgaaggacatgaattgggacttgagtcagtggtgtccc
cttattgatgatagatgttttctgcagtggcttgttaaggttccatctgaacaggagcag
ttgagggcacgacaaatcagtgctcaacaaataaataaggttgaagaactttggaagacc
aatcctgatgctaccttggaagatcttgaaaagcctggtgtggatgatgaacctcagccc
gtggccttgaagtatgaagatgcttatcagtatcaaaatgtgttcgcaccacttatcaag
cttgaagctgactatgataaaatgatgaaagagtctcaaagcaaagacaatcttacgata
cggtgggatattggccttaacaagaagcgcattgcatattttgtgtttccaaaggaagat
aatgagttgcgtcttgtacctggtgatgaattgaggctacgttattcaggagatgctgct
catccagcttggcaaacagtagggcatgtgataaaattaactgcacaagaggaggttgct
cttgagcttcgtgccagtcagggagttcctgttgatgtgaactatggttttagtgttgat
tttgtatggaagagcacaagttttgatcggatgcagggagcaatgaaaacttttgctgtt
gatgagacaagtgttagtggatacatttatcaccacttgttgggacatgaggttgaggtt
caaatggttcgtaatacattacctcgtcgttttggtgcagctggcctgccagagcttaat
gcatctcaaatttttgctgtgaaaagtgttcttcaaaagccagtaagtttaattcaaggt
ccacctggcacgggaaaaactgttacttctgcagcaattgtgtatcatatggccaagcaa
ggccaggggcaggttttggtttgtgctcctagtaatgtggctgttgatcaactagctgaa
aagatcagtgccacggggttgaaggtcgtcaggatctctgcaaaatcaagggaagccgta
agttctcctgttgagcatttaacccttcactatcaggttcggcatcttgacacatctgaa
aagagtgaacttcacaagttacagcaactaaaagatgaacaaggagaattatccagcagt
gatgaaaaaaaatataaagccctcaagcgagcaacggagagagagatatctcagagcgct
gatgtcatttgttgtacatgtgttggtgctggcgatcctcgacttgctaattttagattt
cgccaggtcctcattgatgagtctactcaatcgacagagcctgagtgtcttattccctta
gttcttggagccaagcaggttgttctggttggtgatcattgccagcttggtccggtcata
atgtgcaagaaagcagctcgtgctggcctagcccagtctctatttgaacgcctagtgcta
cttggtgtgaaaccaatcaggttgcaggttcaataccgcatgcatccatctctttcagaa
ttcccttccaacagtttttatgaaggtacgcttcaaaatggagtgacaatcaatgaaagg
caatcaccgggcactgattttccttggcctgtgccaaatcgtccaatgttcttttatgtt
cagatgggacaagaggagataagtgctagtggaacatcctatctgaaccggactgaggct
tcgaatgttgagaaaattgtgactaccttcttaaagagcggtgtagttcctagtcagatt
ggggttattacaccatacgagggacaacgagcatatattgtgaattacatgtcaagaaat
ggtgctctcaggcagcaactttacaaggaaattgaggttgcaagtgtagattcattccaa
ggaagggagaaagactacattattttgtcttgtgtgaggagtaacgaacatcagggcatt
ggattccttaatgatccaaggaggcttaatgtagcactcacccgtgctcgttatggtatt
gtcatcttgggtaaccctaaagttctaagcaaacagcaactgtggaatggtttattgaca
cactacaaggagcatgagtgcttggtggaggggcctttaaataacttaaaacaaagtatg
gttcagtttcaaaagcctaaaaagatctacaatgaccgtagacttttctttggtggtgga
cctggaattgttcccgatacctttggatctgttccctcatcaagtccaaattccgatagg
agaaacagtcgttctaggggttcttacatgccatctggcccacccaatggtacccataaa
cctggggtacatcctactggatacccgatgcctcgagttcctcttccaccgtatcacggt
gccctcccttcacaaccatatgctattccaactcgtggagctgttcatggacctgttgga
gctgttcctcatgttcctcaacctggaaatcggggttttggggctggacggggcagtact
ggtactcctattggcagtcatcttccacaccagcaaggctcccagcaacctattggaaat
cttgaatccactttcaatttcccccctttggagaatctgaacagccagccatccgttggt
ggaccattgtctcaacctggattcgtttctaatatgactgttcaaggaccaaaccagacc
tttcgggatggtttctctatggggggcatgtctcaggatttcttgggtgatgatttcaaa
agtcagggatcacatgttccatataatgttgccgacttctcttcacaggcttctcagggt
ggatatggtgttgattatgtgacacaaggagtccaaggtgggttcccaggaagctttgta
aaccataattctcaggctggatattcccgttttggtgcaggaaatgatttcatgtctcag
gattacatggctcatgggtcccagggtctgttcacacaagttggattcaatgatccatca
caagatgatgcttcccaaagccacttcggcatggccaatgccaacccccttcattctcag
ggtttgatgaaccctctatattcccagccatttgcgcactataatacacagtcattaaac
ttgaaagccacacagcagcagccacagcaggatcagaactcccaaaaccagatacttcac
tacaacggttga
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